Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0900 ATGGGAAGGTCTCCTTGCTGCGAGAAAGCTCACACCAACAAAGGAGCATGGACCAAGGAAGAAGACGACCGTCTCGTCGCTTATATTCGAGCTCACGGCGAGGGCTGCTGGCGCTCTCTCCCCAAAGCCGCTGGCCTCCTCCGTTGTGGCAAGAGCTGCCGTCTCCGCTGGATCAACTACCTCCGTCCCGACCTTAAACGCGGAAATTTTACCGAACAAGAGGATGAGCTCATCATCAAGCTCCACAGTCTCCTCGGCAACAAGTGGTCGCTGATAGCTGGGAGATTACAAGGAAGAACGGACAACGAAATAAAGAATTACTGGAACACTCATATAAAAAGGAAGCTTCTGAGCAGAGGAATTGACCCCGCAACTCACAGGCCTCTCAACGAGGCTTCTCAGAACCAATCTCTTGCCCCGTCTGCTTCTGCTGCTAAACAGCAAGAGTCGGATCGGGTTCCGATGACGGGTGCGAATTCCGAACGACCCGGCGTCTTAGAAGTGTGCCCCGATCTGAACCTTGAGCTGACCATCAGTCTTCCCCATCATCATCGTAATCAGAAGCAACCAGATCGGCCATCGCTCAACAGTAGTGGGAGCAATAGTGGAAGCAGCTCGGATGGCGATGGTTATGATTTCTTGGGATTGAAAAGCGGTGTTTTGGATTGCAGGAGCAGCATGACCCAAATAGATTGGAGAGCACTCAGAGAATGA 714 0.5224 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDELIIKLHSLLGNKWSLIAGRLQGRTDNEIKNYWNTHIKRKLLSRGIDPATHRPLNEASQNQSLAPSASAAKQQESDRVPMTGANSERPGVLEVCPDLNLELTISLPHHHRNQKQPDRPSLNSSGSNSGSSSDGDGYDFLGLKSGVLDCRSSMTQIDWRALRE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0900 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 185 - -
Prci11g0900 237 MobiDBLite consensus disorder prediction 191 208 - -
Prci11g0900 237 FunFam Myb transcription factor 68 137 - -
Prci11g0900 237 FunFam MYB-related transcription factor 13 66 - -
Prci11g0900 237 CDD SANT 69 112 IPR001005 -
Prci11g0900 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci11g0900 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci11g0900 237 Gene3D - 14 66 - -
Prci11g0900 237 MobiDBLite consensus disorder prediction 183 210 - -
Prci11g0900 237 CDD SANT 16 61 IPR001005 -
Prci11g0900 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci11g0900 237 SMART sant 13 63 IPR001005 -
Prci11g0900 237 SMART sant 66 114 IPR001005 -
Prci11g0900 237 Gene3D - 69 153 - -
Prci11g0900 237 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Prci11g0900 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci11g0900 237 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci11g0900 237 MobiDBLite consensus disorder prediction 128 155 - -
Prci11g0900 237 MobiDBLite consensus disorder prediction 123 164 - -
Prci11g0900 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0900 Prci-Chr11 8311358 8312908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0900 1 216 MYB Transcription Factor Family AT4G38620 58.113 4.73e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci11g0900 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0900 K09422 - csin:114298594 322.013