Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0877 ATGATGGATTTTGATGAATACGAGTACTTAGAGAAGACAGTTGAAAATCCTGAGCTTCAGAGGAAGGAGAAAACCAATGGTAGTGATGGAACTCTAAAAGCTGAACAGAGAGACCATAGTCGGAGTTCAAAGCATAAAGCTAGTGAGAAGCATCATGATGTTGATCGTCATTCCAAGAAATTAAAATTTGGAGATGATTCTCATGGTTATGACAATCACAAAGAAAGAGGGTCATCTCGGCATCGTTCACCATCCAGAGATGGAGATAAGGAGAAAGATCAGCACAGAAGCTTCCGTGACAATAGGGATAGGGTGAGAGATCATGAGAGAGACAAGGAGGAGAAGTATAGTAGAGAGAGGGATAGACACCAAGAACATGCCCGTGAACGAGAAAGAGACAAAAGAGACTGGGGGAGTGAGATTGAAAGAGAAAGGGAGAGGGACCACTCACGGCGAAGCAGAAGTATATCTGAAAGGCATCGGAGTGATCTGGATGAAAGATATAGTGAGAGGAGTCGTGACAGAGACAGAGAAAGAAGCCAGGACAAGGATCACAGAGACAGAGAAAGGGAGAGAGAATCAAAGGAGCGAGACAGGGATAGCAGACGACAAAAAGAGAAGAAGGAAGAAGTGGCAGAACCTGAGGCTGACCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATATCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCATTTCCCGTCGATCTAAGGGTGTTGGGTATATTGAATTCTATGATGTCATGTCTGTTCCCATGGCAATAGCACTTTCTGGACAGCCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCGCTACATCTATATCTAGCGGATCCACTGGACTTCTTGGCCCTTATTCTGGGGGAGTGAGAAGGCTCTATGTTGGCAATTTGCATTTCAGTATTACTGAAGCTGATCTGCGTAGGGTTTTTGAAGCATTCGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAGCTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCATGCCTTGAAGACGCAAGAAATGCCCAGAGCTTAAATGGACAACTGGAAATTGGTGGCAGGACAATTAAGGTATCCGCAGTTATTGATCAAACTGGAATGCAAGAAGTTGAAGGAAATACTGGTGATTTGGATGATGATGACAACGATGGTGGTGGCTTGTCCCTAAACGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGGATCAGGTATTGCTGGTTCCCTGGGTAATTCTGTTGCCAACAACATAGGGCTTAAACTACCAGCTACAGCACAAGTGGGAGCTTCGTCTGCGGGTTCTCTACTGGTTTCTCCAATTGCTTCGGTTCCTTCAGCAGTTGGGTTGCCAAGTGGAAGTCTACAAATTCCTGCTGCTGCTGCTACAATTCCTACTATTGATACAATTGGCGTTCCAAGTGGATGCTTATTGTTAAAGAATATGTTCGATCCCAAAGATGAGAAGGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCGGAATGCTCTAAGTTTGGAAAGTTAAAACACGTATATGTTGACAAGAACAGTGCTGGCTTTGTCTACTTGAAATTTGAAAATACTCAAGCTGCGATACTTGCACAGCGGTCACTGCATGGGAGGTGGTTTGCTGGGAAGATGATCACTGCTAGCTTCATGGTGCCTCAGGTATATGAGGATAAATTCCAAGACAGCAGATAG 1845 0.4482 MMDFDEYEYLEKTVENPELQRKEKTNGSDGTLKAEQRDHSRSSKHKASEKHHDVDRHSKKLKFGDDSHGYDNHKERGSSRHRSPSRDGDKEKDQHRSFRDNRDRVRDHERDKEEKYSRERDRHQEHARERERDKRDWGSEIERERERDHSRRSRSISERHRSDLDERYSERSRDRDRERSQDKDHRDRERERESKERDRDSRRQKEKKEEVAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRISRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSATSISSGSTGLLGPYSGGVRRLYVGNLHFSITEADLRRVFEAFGQVELVQLPLDEAGHCKGFGFVQFACLEDARNAQSLNGQLEIGGRTIKVSAVIDQTGMQEVEGNTGDLDDDDNDGGGLSLNACSRALLMQKLDRSGTGSGIAGSLGNSVANNIGLKLPATAQVGASSAGSLLVSPIASVPSAVGLPSGSLQIPAAAATIPTIDTIGVPSGCLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHVYVDKNSAGFVYLKFENTQAAILAQRSLHGRWFAGKMITASFMVPQVYEDKFQDSR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0877 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 404 IPR000504 GO:0003723
Prci11g0877 614 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 612 IPR006509 GO:0003723|GO:0005634|GO:0006397
Prci11g0877 614 FunFam RNA-binding protein 39 isoform X1 216 308 - -
Prci11g0877 614 Gene3D - 516 614 IPR012677 -
Prci11g0877 614 FunFam CC1-like, splicing factor 322 432 - -
Prci11g0877 614 CDD RRM3_RBM39_like 519 601 - -
Prci11g0877 614 FunFam Splicing factor, CC1-like protein 515 614 - -
Prci11g0877 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 603 IPR000504 GO:0003723
Prci11g0877 614 NCBIfam splicing factor, CC1-like family 102 612 IPR006509 GO:0003723|GO:0005634|GO:0006397
Prci11g0877 614 Gene3D - 155 308 IPR012677 -
Prci11g0877 614 Gene3D - 320 409 IPR012677 -
Prci11g0877 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
Prci11g0877 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 544 596 IPR000504 GO:0003723
Prci11g0877 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 292 IPR000504 GO:0003723
Prci11g0877 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 398 IPR000504 GO:0003723
Prci11g0877 614 CDD RRM1_RBM39_like 224 296 - -
Prci11g0877 614 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 421 538 IPR029123 -
Prci11g0877 614 SUPERFAMILY RNA-binding domain, RBD 517 600 IPR035979 GO:0003676
Prci11g0877 614 SUPERFAMILY RNA-binding domain, RBD 324 417 IPR035979 GO:0003676
Prci11g0877 614 SMART rrm2_1 521 599 IPR003954 GO:0003676
Prci11g0877 614 SMART rrm1_1 328 400 IPR000504 GO:0003723
Prci11g0877 614 SMART rrm1_1 224 296 IPR000504 GO:0003723
Prci11g0877 614 SMART rrm1_1 521 599 IPR000504 GO:0003723
Prci11g0877 614 MobiDBLite consensus disorder prediction 1 222 - -
Prci11g0877 614 SUPERFAMILY RNA-binding domain, RBD 217 314 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0877 Prci-Chr11 8171944 8181153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0877 224 390 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 1.30e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0877 K13091 - qsa:O6P43_011435 768.459