Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0847 ATGGCTTTCTTCCTTTGCTTTATCTTCCTTCTTGTTTCATCTGCTACTGCTTGCGATCGCTGCGTCCACCAAACTAAGGCTTCTTATTTCTCTGACGACTCTGCTCTTTCCTCTGGGGCATGTGGGTATGGCTCCTTGGCGTTGGAATTAAGTGGTGGACACCTTGCAGCTGGTGTTCCTTCCTTGTACAAAAATGGAGCCCGTTGCGGTGCATGCTTTCAGATAAGATGCAAGAGCTCAGGCCTGTGTACCAAATCAGGTAGCAGAGTTGTATTGACCGATCTCAATGCCCATAATGAAACTGATTTTGTGCTCAGCAGAAGTGCCTTCGTTGCCATGGCCCAAAAGGGTAGCGATCAACAACTTTTGAAGCTCGGAATCTTGGATGTTGAATTCAAGAGAGTTCCGTGTGAGTACAAAAATAAGAATTTGGCGGTCCGGGTGGAAGAGTCAAGCAAAAAACCATATTACTTGGCAATTAAATTTTTGTACGAAGGAGGTCAAACAGAGATAGTAGCCGTTGATGTTGCTCAGGTTGAATCTTCAAACTGGAGCTTCATGAGCAGAAACCATGGAGCAGTGTGGGACACAAGCAGGGTTCCAGGTGGCGCATTACAAATGAGGATAGTGGTGACAGCAGGGTACGATGGAAAATGGATCTGGGCAAAGAAGGTGTTACCTGCAGATTGGAAAACTGGACAGGTGTATGACACTGGTGTTCAGATAACTGATATTGCACAAGAGGGCTGTTCTCCCTGTGATGATGCCACCTGGTCTTTGAACCTATTCACTTCTCATATTTGA 804 0.459 MAFFLCFIFLLVSSATACDRCVHQTKASYFSDDSALSSGACGYGSLALELSGGHLAAGVPSLYKNGARCGACFQIRCKSSGLCTKSGSRVVLTDLNAHNETDFVLSRSAFVAMAQKGSDQQLLKLGILDVEFKRVPCEYKNKNLAVRVEESSKKPYYLAIKFLYEGGQTEIVAVDVAQVESSNWSFMSRNHGAVWDTSRVPGGALQMRIVVTAGYDGKWIWAKKVLPADWKTGQVYDTGVQITDIAQEGCSPCDDATWSLNLFTSHI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0847 267 CDD DPBB_EXLA_N 13 139 - -
Prci11g0847 267 Gene3D - 11 138 IPR036908 -
Prci11g0847 267 Pfam Lytic transglycolase 56 131 IPR009009 -
Prci11g0847 267 Gene3D - 139 243 IPR036749 -
Prci11g0847 267 SUPERFAMILY Barwin-like endoglucanases 6 141 IPR036908 -
Prci11g0847 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Prci11g0847 267 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Prci11g0847 267 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Prci11g0847 267 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Prci11g0847 267 FunFam Expansin-like A2 139 243 - -
Prci11g0847 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Prci11g0847 267 Pfam Expansin C-terminal domain 145 227 IPR007117 -
Prci11g0847 267 SUPERFAMILY PHL pollen allergen 142 237 IPR036749 -
Prci11g0847 267 PANTHER EXPANSIN-B3 11 241 - -
Prci11g0847 267 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Prci11g0847 267 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Prci11g0847 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Prci11g0847 267 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Prci11g0847 267 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0847 Prci-Chr11 7941419 7943056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0847 15 259 Expansin Gene Family AT4G38400 63.563 3.12e-109 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0847 - - cave:132192007 436.032