Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0838 ATGAGTGAAATGACGTCGACGGCGGATGTGGAACTGCCAGGCTTCCGATTCCACCCCACTGAAGAAGAACTCCTCGATTTCTATCTCAAGAACACCATCCTCGGCAAGAAGCTGCGCTTCGACATCATCGGTTTCCTAAACATCTATCACCACGATCCCTGGGACTTGCCCGGTCTTGCCAAGGTGGGAGAAAGAGAATGGTACTTCTTTGTGCCGAGGGACAAGAAGCACGGCAGCGGAGGCAGGCCCAACCGGACCACCCAGAAAGGGTTCTGGAAAGCCACCGGTTCGGACCGCAAAATCATAAGCTTGTCCGAGCCGAAACGCCTCATCGGGCTGAGGAAGACCCTGGTTTTCTACAGCGGCAGAGCCCCCCGCGGGTCCAAGACGGACTGGGTGATGAATGAGTACCGCCTGCCAGACTCCTGCCAGCTCCCCAAGGACGTGGTGCTGTGCAAGATATACAGAAAGGCGACGTCCTTGAAGGTGTTGGAGCTGAGGGCGGCGCAGGAAGAGGAGATGAAGCAGCTCGACAGCATCTCGCCCTGCAGCTCCGCCGACACCCCCACGCAACATTCCCGGCAGGTGGTTTTCAAGCAAGAAACGCCGGAGCCTGAGAGCTTTCAAGACCACAAAATCCCCGACCTCCAGCTTCCCGTCATTTCCGCGGACTGGAACCAAGACCCCTTCTGGACTCAAACTAACAACAGTTCTTGGTTATCTGCACTCTCCCCCACCCTCCTCAACTTCTAA 753 0.5657 MSEMTSTADVELPGFRFHPTEEELLDFYLKNTILGKKLRFDIIGFLNIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTQKGFWKATGSDRKIISLSEPKRLIGLRKTLVFYSGRAPRGSKTDWVMNEYRLPDSCQLPKDVVLCKIYRKATSLKVLELRAAQEEEMKQLDSISPCSSADTPTQHSRQVVFKQETPEPESFQDHKIPDLQLPVISADWNQDPFWTQTNNSSWLSALSPTLLNF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0838 250 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Prci11g0838 250 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 199 - -
Prci11g0838 250 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Prci11g0838 250 FunFam NAC domain-containing protein 67-like 20 161 - -
Prci11g0838 250 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Prci11g0838 250 SUPERFAMILY NAC domain 10 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0838 Prci-Chr11 7922041 7923250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0838 9 247 NAC Transcription Factor Family AT2G17040 56.569 1.51e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci11g0838 NAM 3.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0838 - - qsu:112004646 361.688