Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0803 ATGCAGAGCCAGCTTTTGTGTAGTGGATGTAGGAACATATTGCTTTATCCCAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACGCAGTTACCTCCGTTCCTCCACCTGGAATCGAAATATCTCATCTTTATTGTGGAAGCTGTCAGACATTGCTAATGTTCACACATGGAGCTCCAAGTGTGAAATGTTCTTGCTGTCAAACTGTAAACCTTGCGTCAGCCTCTAACCAACTTGCTCATATACACTGTGGAAACTGCCGGACTACACTCATGTATCCGTATGGTGCTCCATCAGTCAAATGTGCAGTTTGTCACTATATTACTAACAGTACGAGCAATGGAAGAATTCCAATTCCTGTCCCGAGACCTAATGGAACACCCAACTCTGGAACATTGTCTTCTACTCCAATTAGCCAAACTGTCCTGGTTGAAAATCCTATGTCTGTCGATGCAAGTGGGAAACTGGTGAGTAATGTGGTCGTTGGCATTACAGCTGATAGGAAATAA 510 0.4392 MQSQLLCSGCRNILLYPRGATNVCCALCNAVTSVPPPGIEISHLYCGSCQTLLMFTHGAPSVKCSCCQTVNLASASNQLAHIHCGNCRTTLMYPYGAPSVKCAVCHYITNSTSNGRIPIPVPRPNGTPNSGTLSSTPISQTVLVENPMSVDASGKLVSNVVVGITADRK 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0803 169 PANTHER PROTEIN LSD1 2 167 IPR040319 -
Prci11g0803 169 NCBIfam zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Prci11g0803 169 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Prci11g0803 169 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Prci11g0803 169 Pfam LSD1 zinc finger 46 70 IPR005735 -
Prci11g0803 169 Pfam LSD1 zinc finger 7 31 IPR005735 -
Prci11g0803 169 Pfam LSD1 zinc finger 84 108 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0803 Prci-Chr11 7481556 7491092 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Prci11g0803 zf-LSD1 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0803 - K12191 gmx:100776394 282.722