Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0742 ATGACTTCATCTGATCATGACCTGATTGAAAACGAACCTAATGAGCAGCAACATCAATCAAACTCAGAGATGCAGTCTTCATCTACAAACGGAATTTCTGATTCAGGTATTGTTACCCAGAATGTTCAGTATGCAGCGCCTCCTCCACAGATTGGAACTGGACATCCTATGGCACAAGTTTACCCATACCCAGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGACGCAGCCTTATCCCCCACAGCCCTATGGAACACAACCAATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGCTCCTCTACCAACAGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAGCAGTATCATGGTATATTGAGACGCAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAGGAATCGCAAGCCATATTTGCATGAATCCCGGCATTTGCATGCATTGAGAAGAGCACGAGGATGCGGAGGTAGATTTCTTAATTCAAAGAAAAGCGAGAACCAACAGAATGAGGTGTCATCAACAGATAAATCACTGTCCAATACCAATCTCAATCCTGACCAAAAGGATCTTGCTTCATCAGATAGGATTTCCTAA 621 0.4283 MTSSDHDLIENEPNEQQHQSNSEMQSSSTNGISDSGIVTQNVQYAAPPPQIGTGHPMAQVYPYPDPYYRSIFAPYETQPYPPQPYGTQPMVHLQLMGIQQAGAPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKSENQQNEVSSTDKSLSNTNLNPDQKDLASSDRIS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0742 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Prci11g0742 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 194 IPR001289 GO:0003700|GO:0006355
Prci11g0742 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Prci11g0742 206 Gene3D - 110 171 - -
Prci11g0742 206 MobiDBLite consensus disorder prediction 165 206 - -
Prci11g0742 206 MobiDBLite consensus disorder prediction 14 39 - -
Prci11g0742 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Prci11g0742 206 MobiDBLite consensus disorder prediction 1 39 - -
Prci11g0742 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Prci11g0742 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Prci11g0742 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Prci11g0742 206 MobiDBLite consensus disorder prediction 169 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0742 Prci-Chr11 7019395 7023798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0742 1 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.212 2.51e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci11g0742 CBFB_NFYA 9.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0742 K08064 - gmx:100809036 302.367