Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0706 ATGGAGGATCACGCGGGTTTAGGAGGTGGAGTATCTGTTAACATCGGAAGGGAAGAAGAAGAAGATGAATTTTGCAGTTGTTGTGAAGAAGAAGAAGAATTTTTGAAAGAATCTGAGCAGCCAGCGGTGGAAGAGTTGAAGGAGGACTTTGACGAATCTTCAGTGAAAATGTTCTTTAAGGGATTGTCTATAGCTGGGGTTGAAAATTCCAGTTCTGGATATTCTGGAATTGGAGTCTTCATGGAAAGACCATCCGGTCTTCCAGCTATCCGTGTGCAGAAAAAGCTCGACTTTTATGCAGAAAACCTATTAGCTGAATACTTGGCTCTCATCGATGGCTTGCTGGAAGCTATGCGGAATAACGTCCACCGGGTTTACGCTTTTACAGATTCTGAGTTATTGTACGATCAGATAACGTTTGAGAAGAATCTTGAGATGCCACTTTTGATAGCACTGAGAGAAAGGGTTCTGGATCATGCCAATAATTTTGAATCATTTGTTCTTAATCTTGTTCCTAGCATTGATCTTGAGAAACCGCTGCAATTAGCTAAAGTCGCTATTGGCCTTGTCTCTCTTCCTATAGATGGTGGGAAAGTGCTCGAAAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCAATAATGATCACCATGAAATGTTCACACAAGTTTTGTTCACATTGTTTGAGGGCTTATGTTGATGGAAAGGTACAGTCTTGTCAAGTCCCCATAAGATGTCCTCAACCAAGATGCAAATATTACATCTCTACTGCAGAATGCAGGTCTTTTCTTCCATTTACCTCTTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCAAATGTTTCAGATAGAATTTACTGCCCGTTTCCAAATTGTTCTGTTCTCCTTGATCCTCGTGAATGTTTATCAGCCAGGGCTAGTTCGTCTAGCCAATCAGACAATTCTTGTGTTGAATGTCCTGTTTGTCAGAGGTTTATATGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGACGATTACCAGAATTTACCAGAGGAGGAGCGAGATGCTTCTGACATTACCTTGCATCGCCTAGCTCAAAATAAACGATGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAGCTTACTCAAGGCTGTTATCATATGACCTGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGAGCAGAATACAGGGATGGCCAACAGACTTGTCAGTGTGTGTTTTGGGATGAAGACAACTCTGAAGACTCAGTGACTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCCATGGTCATGGATGCATACTCGGACCAAGAACGTTCACAGCTTGCACTTATACAACGATTCCTTGCTGGTGGTTTCAGTCTGAGTGACCATCATCCTTACCAATCCCCTCCCCATTGGACAGACTCCTATGTTGATGCCATGAAGGATCTACATCAGCTTCCGTGGCTCGAGCGATTTGTCTCTGTGATAAGTGATAACTATTATGAAGACTATATTCAATAA 1548 0.4276 MEDHAGLGGGVSVNIGREEEEDEFCSCCEEEEEFLKESEQPAVEELKEDFDESSVKMFFKGLSIAGVENSSSGYSGIGVFMERPSGLPAIRVQKKLDFYAENLLAEYLALIDGLLEAMRNNVHRVYAFTDSELLYDQITFEKNLEMPLLIALRERVLDHANNFESFVLNLVPSIDLEKPLQLAKVAIGLVSLPIDGGKVLESCSICCEDKPLPIMITMKCSHKFCSHCLRAYVDGKVQSCQVPIRCPQPRCKYYISTAECRSFLPFTSFESLEKALAEANVSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCQRFICVDCEVPWHSSMSCDDYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMVMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPHWTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0706 515 SUPERFAMILY Ribonuclease H-like 69 172 IPR012337 -
Prci11g0706 515 ProSiteProfiles TRIAD supradomain profile. 199 415 IPR044066 -
Prci11g0706 515 Gene3D - 338 462 - -
Prci11g0706 515 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 57 458 IPR031127 GO:0004842|GO:0016567
Prci11g0706 515 ProSiteProfiles Zinc finger RING-type profile. 203 250 IPR001841 -
Prci11g0706 515 SMART ibrneu5 350 409 IPR002867 GO:0008270
Prci11g0706 515 SMART ibrneu5 270 340 IPR002867 GO:0008270
Prci11g0706 515 FunFam RBR-type E3 ubiquitin transferase 338 463 - -
Prci11g0706 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 283 IPR013083 -
Prci11g0706 515 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Prci11g0706 515 SUPERFAMILY RING/U-box 353 417 - -
Prci11g0706 515 CDD Rcat_RBR_unk 366 402 - -
Prci11g0706 515 SUPERFAMILY RING/U-box 201 278 - -
Prci11g0706 515 FunFam RBR-type E3 ubiquitin transferase 55 190 - -
Prci11g0706 515 Gene3D - 56 189 IPR036397 GO:0003676
Prci11g0706 515 FunFam RBR-type E3 ubiquitin transferase 198 283 - -
Prci11g0706 515 Pfam IBR domain, a half RING-finger domain 279 340 IPR002867 GO:0008270
Prci11g0706 515 Pfam IBR domain, a half RING-finger domain 360 409 IPR002867 GO:0008270
Prci11g0706 515 Pfam Reverse transcriptase-like 66 172 IPR002156 GO:0003676|GO:0004523
Prci11g0706 515 CDD BRcat_RBR_unk 281 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0706 Prci-Chr11 6717024 6722305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0706 89 400 C3H Transcription Factor Family AT2G19610 29.102 5.96e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0706 - - gmx:100783040 833.943