Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0604 ATGAATTTTTCAATTGGAGGTGCTGGGAATTGGGGTGATAGTGGCCCTAACAATCCTGGTGGCCATGGCAATAAGGGAAGAAAGATCTACCATCGTCACACTCCTTATCAAATAACACAACTCGAAGCATTTTTCAAGGAGTGCCCACACCCAGATGAAAACCAACGACGCCAACTAGGCAGGGAGCTCGGGCTTGATCCTAAACAAATCAAGTTTTGGTTTCAGAATAAGCGGACTCAAACAAAGACTCAACATGAGCGACAAGATAACGCCATGCTTCGAGCCGAAAATGAGAGGATGCAATGTGAGAATATAGCATTCAGAGAGGCACTCAAGAACTTGATCTGTCCGTCCTGTGGGGGTCCACCCTGTGGGGAGCAACACCTTGACCGCCTGCACCAAGAGAATGCCCAACTCAAACAAGAGTATGAGAGAGTATCAAACATTCTTGCAAGGTGCATTGGCAGGCCAATATCAGAACTGGATTCTTCTGCTGATGATCCTTCCTCAGCCGGATCTCCGCCGTCATCGTCACCTGGAAATTCCCTGAACCAAGGAAGTACTGGAAGTCCTATAAGTCTTGATATGGACTTGGGTTCTGCCATCACAGTTTCAGATGAGAACATGTTGCCATCCTTAATGGGAGAAGTCACAGACGTGGAAAAGGATCTCATGTTAGTGGCTGCTAATAACGCCATTGATGAATTACTCAAGCTGGTGCGTATTGAGGAACCCTTATGGATCAAGACTGAGATTGGTGGTGGCCAATTCGTTCTTCACCGTGACAGCTATGAAAAGCTATCTCCTAGGGCTAATCACTTCAGATCTTCCAGTACTCGTGCAGAAGCAACCAAAGATTCACGAATGGTTTGGATGAATAGCATGCAATTGGTTGACATGTTCCTAGATCCGGTCAAGTGGGCCAATCTTTTCCCGACAATTGTTAGAAAAGCTGAAATACTTGAAGTGCTTGATGTTGGATCATCATCAGCAAACCGATCTGGAGCTTTGCAGCTGATGTATGAAGAGATGCACACTCTTTCACCGTTGGTTCCTCCTCGTGAGTTCTGCTTCATTCGTCACTGTCGACAAGTTGATGTAGGTGTGTGGGCAATAGCTGACGTGTCATTCGATTCCTTAAGAGACAACATTCCTATCTCTCGTACTTGGAAGTTCCCTTCTGGTTGCGTGATTCAAGAGATACCCAATGGGTTCTCCCAGGTTACATGGATTGAGCATGTGGAAGTGGATGATAAAACCCATACACACAGGCTGTACAGAGAGCTTGTTTCAGGCAATTATCTTGCTTATGGAGCAGAAAGATGGGTGGTAACACTTCAAAGAATGTGTGAGCGACTTGTATTTGCCTTGGATGAATACACACCAGTCGAGGAAGCTCGAGAAGTGATCAGTTCCGGAGATGGGAGGAGGAGTATAATGGAGCTTGCGAATCGGATGGTGAGGGACTTCAGTGAAGTTCTGAACATGTCAGGGAAGGAGTTCCCTCATTTATGTGAGGCAAGAAACAGTGGGATTAGGGTTTCAGTTCGGAGGAACACAGAAGCGGGTCAGCCTGATGGCATGGTGGTCACTGCTTGTACCTCTCTCTGGCTTCCGGTTCTGCATCAGACTGTGTTTGACTTCTTCACAGATGCCAGAAGACGTTATCAGTGGGACGTTCTGTCCAACGAAAATCCAGAGCATGATGAAATCGCACGCATCTCCAATGGAACTCATCCTGGAAACTGTATCAAAATCATCCGGGAGCAGCCCATCATCCCCGATGAGAAGGAAATGTTGATTCTTCAAGAAACTTGCACTGATGCCTTGGGATCAATGCTCGTGTATGCTCCGATCGACATGCCACTGATCAACCTGTGTGTGAGGGGAACCAACACTTCGCTGGTGCCGATCCTTCCGTCAGGCTTCATGATCTCCGGCGACGCCACCAGTTCATCATCATCGTCAGGAGGAAGTCTTCTGACGGTGGCTTTCCAGGTACTGGTTTGCAGCAACTCGGCGATGAGGCAATTGAGCGTTGAAACTGTGGCCACCATCAACTCACTCCTCAGCTCCACTGTAGAGAAGATTAAGGATGGCTTGAACTGTGCTGGTCTGGATTAA 2124 0.4741 MNFSIGGAGNWGDSGPNNPGGHGNKGRKIYHRHTPYQITQLEAFFKECPHPDENQRRQLGRELGLDPKQIKFWFQNKRTQTKTQHERQDNAMLRAENERMQCENIAFREALKNLICPSCGGPPCGEQHLDRLHQENAQLKQEYERVSNILARCIGRPISELDSSADDPSSAGSPPSSSPGNSLNQGSTGSPISLDMDLGSAITVSDENMLPSLMGEVTDVEKDLMLVAANNAIDELLKLVRIEEPLWIKTEIGGGQFVLHRDSYEKLSPRANHFRSSSTRAEATKDSRMVWMNSMQLVDMFLDPVKWANLFPTIVRKAEILEVLDVGSSSANRSGALQLMYEEMHTLSPLVPPREFCFIRHCRQVDVGVWAIADVSFDSLRDNIPISRTWKFPSGCVIQEIPNGFSQVTWIEHVEVDDKTHTHRLYRELVSGNYLAYGAERWVVTLQRMCERLVFALDEYTPVEEAREVISSGDGRRSIMELANRMVRDFSEVLNMSGKEFPHLCEARNSGIRVSVRRNTEAGQPDGMVVTACTSLWLPVLHQTVFDFFTDARRRYQWDVLSNENPEHDEIARISNGTHPGNCIKIIREQPIIPDEKEMLILQETCTDALGSMLVYAPIDMPLINLCVRGTNTSLVPILPSGFMISGDATSSSSSSGGSLLTVAFQVLVCSNSAMRQLSVETVATINSLLSSTVEKIKDGLNCAGLD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0604 707 SUPERFAMILY Homeodomain-like 19 88 IPR009057 -
Prci11g0604 707 Coils Coil 129 149 - -
Prci11g0604 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 27 701 IPR042160 -
Prci11g0604 707 SUPERFAMILY Bet v1-like 222 452 - -
Prci11g0604 707 Gene3D - 17 101 - -
Prci11g0604 707 SMART HOX_1 26 88 IPR001356 GO:0003677
Prci11g0604 707 CDD homeodomain 27 85 IPR001356 GO:0003677
Prci11g0604 707 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Prci11g0604 707 ProSiteProfiles START domain profile. 218 455 IPR002913 GO:0008289
Prci11g0604 707 Gene3D - 228 428 IPR023393 -
Prci11g0604 707 MobiDBLite consensus disorder prediction 161 195 - -
Prci11g0604 707 Pfam START domain 230 452 IPR002913 GO:0008289
Prci11g0604 707 MobiDBLite consensus disorder prediction 1 28 - -
Prci11g0604 707 SMART START_1 227 452 IPR002913 GO:0008289
Prci11g0604 707 FunFam Homeobox-leucine zipper protein HDG1 15 100 - -
Prci11g0604 707 Pfam Homeodomain 28 82 IPR001356 GO:0003677
Prci11g0604 707 CDD START_ArGLABRA2_like 222 451 - -
Prci11g0604 707 MobiDBLite consensus disorder prediction 163 194 - -
Prci11g0604 707 SUPERFAMILY Bet v1-like 475 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0604 Prci-Chr11 5980183 5986879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0604 24 702 Homeobox Transcription Factor Family AT1G73360 45.312 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci11g0604 START 6.9e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0604 K09338 - rcu:8266520 795.423