Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0584 ATGGGTCGTCGAAAGATCGAGATGAAGCTGGTGAGAGACTCAAGCTCAAGGCAAGTCACCTTCACCAAGCGTCGCAATGGCGTGTTCAAGAAAGCAAACGAGCTCACGACATTGTGCGGAGCAGAAGTCGCCGTCATCGCTTTCTCTCCTGGAGGAAAGCCTTTCTCCTACGGCCAACCCGGCGTCGACGCCGTGGCCAATAGGTTCCTCCGCCGTGGTTCCGTCAGAAGCAAACCGGACAACATTAACGGTACTGCGATTGAGAAGCTGAGCCAGGAGCTTATGAATCTGATGAATGAGAGTGAGGCCGAGAAGAAGAAGGCAGAGATGCTTGACGAGAGGTTGAAGAAGATGAACTTGACTTGTTCGGGGAAGCTGCCATTGGAAGGTCTGAATAAGGATCAGCTTCAAAAGCTGAAGAGGTCCTTGGAAGAAATGAAAGAAGAAGTTCGAGAGAGCGTGAAGCAATTGGAGGCATCTTCAGGCTTGATGCTTCTTGTTCAGAAAGCTGCGGACGATAAAGAGAGTCATAGTAATAATGCTTGA 546 0.5 MGRRKIEMKLVRDSSSRQVTFTKRRNGVFKKANELTTLCGAEVAVIAFSPGGKPFSYGQPGVDAVANRFLRRGSVRSKPDNINGTAIEKLSQELMNLMNESEAEKKKAEMLDERLKKMNLTCSGKLPLEGLNKDQLQKLKRSLEEMKEEVRESVKQLEASSGLMLLVQKAADDKESHSNNA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0584 181 PANTHER MADS BOX PROTEIN 3 151 - -
Prci11g0584 181 Coils Coil 87 118 - -
Prci11g0584 181 Coils Coil 129 160 - -
Prci11g0584 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0584 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0584 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0584 181 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Prci11g0584 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0584 181 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Prci11g0584 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0584 181 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Prci11g0584 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0584 Prci-Chr11 5826958 5827503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0584 1 169 Type I MADS-box Gene Family AT2G34440 44.509 1.02e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci11g0584 SRF-TF 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0584 - - pcin:129286044 350.903