Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0575 ATGAGATTCTCTTCAGCTGGTTTTAATCCTTCACCCCCGGAAGGAGAAAAGCGAGTTCTGGATTCTGAGCTTTGGCATGCCTGCGCTGGCCCTCTTGTTTCCCTGCCAGCTGTTGGAAGCCGCGTCGTCTATTTCCCCCAGGGTCATAGTGAACAGGTTGCTGCATCAACTAACAAGGAGGTGGACGTCCATATTCCCAACTACCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATGTGACTATGCATGCTGATTCAGAGACTGATGAAGTGTATGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAACAAAAGGAGGCATACCTTCCAGCAGAGTTGGGAACTTCCAGTAAGCAACCAACAAATTACTTCTGCAAAACTTTGACTGCTAGCGACACAAGCACTCATGGGGGATTCTCTGTTCCTCGTCGGGCTGCTGAGAAAGTGTTTCCTCCATTGGATTTCTCTCAGCAGCCTCCTGCACAAGAATTAATTGCACGGGACTTGCATGGCAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCTAAAAGACATCTACTTACAACAGGGTGGAGTGTCTTTGTAAGTGCTAAAAGGCTTGTTGCTGGTGATTCCGTGCTGTTTATTTGGAATGAAAAGAATCAATTGCTTCTTGGTATTCGACATGCAAATCGACCACAAACTGTGATGCCATCATCAGTGCTTTCAAGTGATAGCATGCACCTGGGGCTTCTTGCTGCTGCAGCGCATGCAGCTGCAACAAACAGCCGTTTCACCATTTTCTATAACCCACGTGCCAGCCCATCAGAATTTGTCATACCCTTAGCAAAGTATGTCAAAGCTGTGTATCATACCCGAGTTTCAGTTGGTATGCGTTTCCGGATGTTGTTTGAAACAGAGGAATCAAGTGTCCGGCGATACATGGGCACAATCACTGGCATCAGTGACCTGGATCCTGTTAGGTGGCCAAATTCACATTGGCGATCAGTTAAGGTTGGCTGGGATGAGTCCACAGCTGGAGATAGGCAACCTAGAGTGTCCTTGTGGGAGATTGAGCCGTTAACAACATTTCCAATGTATCCTTCCCCATTCCCTCTTAGGCTTAAACGACCATGGCCTCCCGGACTGCCTTCTTTCCACGGTATGAAGGATGATGATTTGGGTATCAATTCTCCGCTTTTGTGGGATAGAGGGCTTCATTCTCTTAATTTTCCAGGAATTGGGGTTACTCCTTGGATGCAGCCAAGGTTTGATCCCTCCTTTCTGAATTTGCAAACTGACATGTACCAAGCCATGGCTGCTGCTGCCCTTCAGGATATAAGGACTATAGATCCTTCCAAGCAGCATTCAACATCCCTTCTTCAATTTCAGCAACCACAGAACTACCCCAACCGGACTGCTGCTTTAGTGCAGGCCCAGATGCTGCAGCAGTCTCAACCTCAGCAAGCTTTCCAAAATAACCAAGAGAATTTGCATCCATCTCAACCTGAGCCTCTAAGTCAGACTCATCTTCAGCATCAACACTCTTTTGTTAATCAGCATCAGCCGCAGCAACATCAACAGCAAAGTTTTTCTGATCAGCAGATTTCAAATACTGTGTCTACAATGTCTCAGTTTGTTTCGGCACCTCAACCTCAGTCGCCACCAGGGCAAGCTATTTCTTCATTTTGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACAGTGTAACTACTGCAATGGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCAAGAAGAAACTTCCCACCTTCCTAATATCCCTAGGACAAGCTCTTGGATACCTGTTCAACCTTCTACTGCTACTGCTACTTGGCCTTCTAAGCGTGTTGCTGTCGACCCTCTCCTTTCTTCTGGAGCTTCTCAATGTGATCTGCCTCACATGGATCAGTTAGGGCAGCGCCAGAATACATTGTCTCATAATGCAATTACTTTGCCACCCTTTCCTGGAAGGGAGTGCTCGATTGACCATGAAGGGAGTGCTGATCCACAAAACCATCTTTTATTTGGTGTCAATATTGAGCCCTCATCTCTTCTAGCACAGAACGGGATGTCAAGCCTTAAGGGCATCAGCAGCAACTGTGATTCCACAACCATACCTTTTCAGTCGTCCAATTACCTGGGTACTACAGGCACTGAGTCTACATTGAATCCTGCGATGTCGCAAACCATTGGTGAATCAGGATTCTTACCGGTCCCAGAGAATATGGGCCAAGGAAACTCCCCAAATAAAACCTTCGTAAAGGTTCACAAGTCAGGGTCCTTTGGAAGATCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCCGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAATTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAATTTGTCAACAGCGTATGGTGTATCAAGATACTATCCCCGCAAGAAGTGCAACAAATGGGCAATCCTGGCCTCGAGCTTCTGAGTTCAGTTCCGATTCAAAGGCTTTTCAATGGAGCATGCGAAGACTATGTGAACCGACAGGACCCAAGAAGTTCAAGCTCTGGGATCACAACTGTGGGGTCTCTTGACTACTGA 2676 0.4679 MRFSSAGFNPSPPEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDVHIPNYPSLPPQLICQLHNVTMHADSETDEVYAQMTLQPLNPQEQKEAYLPAELGTSSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDLGINSPLLWDRGLHSLNFPGIGVTPWMQPRFDPSFLNLQTDMYQAMAAAALQDIRTIDPSKQHSTSLLQFQQPQNYPNRTAALVQAQMLQQSQPQQAFQNNQENLHPSQPEPLSQTHLQHQHSFVNQHQPQQHQQQSFSDQQISNTVSTMSQFVSAPQPQSPPGQAISSFCHQQSFSDSNGNSVTTAMVSPLHSILGSFPQEETSHLPNIPRTSSWIPVQPSTATATWPSKRVAVDPLLSSGASQCDLPHMDQLGQRQNTLSHNAITLPPFPGRECSIDHEGSADPQNHLLFGVNIEPSSLLAQNGMSSLKGISSNCDSTTIPFQSSNYLGTTGTESTLNPAMSQTIGESGFLPVPENMGQGNSPNKTFVKVHKSGSFGRSLDITKFSSYHELRRELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNPGLELLSSVPIQRLFNGACEDYVNRQDPRSSSSGITTVGSLDY 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0575 891 Gene3D - 754 847 - -
Prci11g0575 891 ProSiteProfiles PB1 domain profile. 758 842 IPR000270 GO:0005515
Prci11g0575 891 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 847 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci11g0575 891 SUPERFAMILY CAD & PB1 domains 750 833 - -
Prci11g0575 891 MobiDBLite consensus disorder prediction 478 533 - -
Prci11g0575 891 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci11g0575 891 Gene3D - 291 363 - -
Prci11g0575 891 FunFam Auxin response factor 753 847 - -
Prci11g0575 891 SMART B3_2 127 229 IPR003340 GO:0003677
Prci11g0575 891 Gene3D - 125 228 IPR015300 -
Prci11g0575 891 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Prci11g0575 891 Pfam AUX/IAA family 752 843 IPR033389 -
Prci11g0575 891 CDD B3_DNA 126 219 IPR003340 GO:0003677
Prci11g0575 891 FunFam Auxin response factor 291 363 - -
Prci11g0575 891 FunFam Auxin response factor 125 229 - -
Prci11g0575 891 MobiDBLite consensus disorder prediction 541 560 - -
Prci11g0575 891 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Prci11g0575 891 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0575 Prci-Chr11 5715017 5721569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0575 1 479 B3 DNA Binding Superfamily AT1G30330 86.777 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci11g0575 AUX_IAA 9.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0575 - - gmx:100796447 1478.38