Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0556 ATGGGTGAACAGAAGCAAAGTGTGCCAGTGCTGCCATGGATGCGGGACCCTGTTGATGTCACACTATCTGAAGAATGCCCCCTCGAATGCGTTCCTTGTCTTCACCCCAAGTTAAAGTTGGCATTGCAGAATATGGGCATCTCTAGGCTCTTTCCTGTGCAAGTTGCAGTCTGGGAAGAGACAGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCTACTGGAAGTGGAAAAACTTTAGCTTATGCCCTTCCAATTGTGCAAATGCTGTCAAACCGTATAGTAAGATGCTTGCGTGCTTTAGTGGTGGTGCCCACTCGCGATCTTGCCTTGCAGGTTAAAGAAGTTTTTGATGCCATTGCATCTCCTCTAGGTTTGCATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGCTGATGAGATTACTAATCTTGTGGATGTACCGGGATATGAAGCAGGCATGTGTTATGATCCAGAAGATATATCACTTCAGTACCAACTTGGTTTCCAAAGTAAGGTGGATATATTAGTAGCTACCCCTGGAAGGCTGATGGATCACATCGCTGCTACTAAAGGGTTCACACTTGAGCATCTTTATTATCTTGTAGTTGATGAAACAGATCGACTTCTTCGAGAGGCCTACCAATCCTGGTTACCTACAGTATTGGAGCTGACTCGATCTAAGGACAATAATATTTATCCGCAAGCTGGTCCTTTTCTTCTTAATTCATTTAGTGCATTGAGCACTAGAAGGAGATGTGGTGTTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGCTAGCAAAGATGGTTTTATCTGCAACAATAACCCAGGACCCAGGCAAGCTTGTTCAACTTGATCTACATCACCCAATATTCTTGAAAGCTGGGCAGATGCGTTATAGGCTTCCAGAAAATTTGGAATCACTTAAACTGATCTGTGACACAAAGGTCAAACCATTGTATTTGGCTGCCCTTTTAAAATCATTGGGAGGAGAAAAATGCATAGTGTTTACAAAATCTGTGGATTCAACACATCGTCTGTGCAAATTGCTGCACTATTTTAGTGATCTTCAATTTAAGATCAAGGAGTATTCTAGTCTACAACGTCAACGTGTAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGAGTTTCTAGTGCTAGTGTCTTCTGATGCAATGACCCGTGGAATGGATGTTGAGGGGGTGAGAAATGTTATTAATTATGACGTGCCGAAATACATTAAGACTTATGTTCATCGAGCAGGTAGGACAGCAAGAGCTGGCCAGACTGGACGTTGCTTCACACTGATGTCCAAAGATGAGGCTAGACGATTTAAGAAGTTGTTGCAGAAGGCTGACAACAGTTCTTGCTGTGAGCACACTTTGCCCTCCAGTTTGATTGAAGAACTTCACGCTAATTACCAATCAGCACTGAAAAGATTTAAAGTGACAGTTTTGGAAGCCGGAAAGAAACGCAAGAGCAGTTCAGAGGCGTCCCAAGCAAAGAGGATGAGAAAGAGCACACAGGGGAATAGCTGCTTATACGCTAATCTTGCAGTTTATGATCCTTGGGGAAGACATCCAAGCAAATGA 1608 0.431 MGEQKQSVPVLPWMRDPVDVTLSEECPLECVPCLHPKLKLALQNMGISRLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRIVRCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEITNLVDVPGYEAGMCYDPEDISLQYQLGFQSKVDILVATPGRLMDHIAATKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDNNIYPQAGPFLLNSFSALSTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGQMRYRLPENLESLKLICDTKVKPLYLAALLKSLGGEKCIVFTKSVDSTHRLCKLLHYFSDLQFKIKEYSSLQRQRVRSKTLKEFRKGEFLVLVSSDAMTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEARRFKKLLQKADNSSCCEHTLPSSLIEELHANYQSALKRFKVTVLEAGKKRKSSSEASQAKRMRKSTQGNSCLYANLAVYDPWGRHPSK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0556 535 Gene3D - 315 521 IPR027417 -
Prci11g0556 535 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
Prci11g0556 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 297 IPR014001 -
Prci11g0556 535 CDD DEADc_DDX51 38 294 - -
Prci11g0556 535 SMART helicmild6 352 433 IPR001650 -
Prci11g0556 535 PANTHER RNA HELICASE 34 487 - -
Prci11g0556 535 Pfam DEAD/DEAH box helicase 52 285 IPR011545 GO:0003676|GO:0005524
Prci11g0556 535 CDD SF2_C_DEAD 315 441 - -
Prci11g0556 535 Gene3D - 23 300 IPR027417 -
Prci11g0556 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 475 IPR001650 -
Prci11g0556 535 FunFam ATP-dependent RNA helicase DDX51 15 300 - -
Prci11g0556 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 455 IPR027417 -
Prci11g0556 535 SMART ultradead3 46 316 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0556 Prci-Chr11 5634532 5642146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0556 70 448 Eukaryotic Initiation Factors Gene Family AT1G72730 24.538 3.47e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0556 K14807 - qsa:O6P43_013012 769.615