Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0555 ATGCCCCCTCGAATGCGTTCCTTGTCTTCACCCCAATTGGCATTGCAGAATATGGGCATCTCTAGGCTCTTTCCTGTGCAAGTTGCAGTCTGGGAAGAGACAGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCTACTGGAAGTGGAAAAACTTTAGCTTATGCCCTTCCAATTGTGCAAATGCTGTCAAACCGTATAGTAAGATGCTTGCGTGCTTTAGTGGTGGTGCCCACTCGCGATCTTGCCTTGCAGGTTAAAGAAGTTTTTGATGCCATTGCATCTCCTCTAGGTTTGCATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGCTGATGAGATTACTAATCTTGTGGATGTACCGGGATATGAAGCAGGCATGTGTTATGATCCAGAAGATATATCACTTCAGTACCAACTTGGTTTCCAAAGTAAGGTGGATATATTAGTAGCTACCCCTGGAAGGCTGATGGATCACATCGCTGCTACTAAAGGGTTCACACTTGAGCATCTTTATTATCTTGTAGTTGATGAAACAGATCGACTTCTTCGAGAGGCCTACCAATCCTGGTTACCTACAGTATTGGAGCTGACTCGATCTAAGGACAATAATATTTATCCGCAAGCTGGTCCTTTTCTTCTTAATTCATTTAGTGCATTGAGCACTAGAAGGAGATGTGGTGTTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGCTAGCAAAGATGGTTTTATCTGCAACAATAACCCAGGACCCAGGCAAGCTTGTTCAACTTGATCTACATCACCCAATATTCTTGAAAGCTGGGCAGATGCGTTATAGGCTTCCAGAAAATTTGGAATCACTTAAACTGATCTGTGACACAAAGGTCAAACCATTGTATTTGGCTGCCCTTTTAAAATCATTGGGAGGAGAAAAATGCATAGTGTTTACAAAATCTGTGGATTCAACACATCGTCTGTGCAAATTGCTGCACTATTTTAGTGATCTTCAATTTAAGATCAAGGAGTATTCTAGTCTACAACGTCAACGTGTAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGAGTTTCTAGTGCTAGTGTCTTCTGATGCAATGACCCGTGGAATGGATGTTGAGGGGGTGAGAAATGTTATTAATTATGACGTGCCGAAATACATTAAGACTTATGTTCATCGAGCAGGTAGGACAGCAAGAGCTGGCCAGACTGGACGTTGCTTCACACTGATGTCCAAAGATGAGGCTAGACGATTTAAGAAGTTGTTGCAGAAGGCTGACAACAGTTCTTGCTGTGAGCACACTTTGCCCTCCAGTTTGATTGAAGAACTTCACGCTAATTACCAATCAGCACTGAAAAGATTTAAAGTGACAGTTTTGGAAGCCGGAAAGAAACGCAAGAGCAGTTCAGAGGCGTCCCAAGCAAAGAGGATGAGAAAGAGCACACAGGGGAATAGCTGCTTATACGCTAATCTTGCAGTTTATGATCCTTGGGGAAGACATCCAAGCAAATGA 1527 0.4276 MPPRMRSLSSPQLALQNMGISRLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRIVRCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEITNLVDVPGYEAGMCYDPEDISLQYQLGFQSKVDILVATPGRLMDHIAATKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDNNIYPQAGPFLLNSFSALSTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGQMRYRLPENLESLKLICDTKVKPLYLAALLKSLGGEKCIVFTKSVDSTHRLCKLLHYFSDLQFKIKEYSSLQRQRVRSKTLKEFRKGEFLVLVSSDAMTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEARRFKKLLQKADNSSCCEHTLPSSLIEELHANYQSALKRFKVTVLEAGKKRKSSSEASQAKRMRKSTQGNSCLYANLAVYDPWGRHPSK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0555 508 Gene3D - 6 273 IPR027417 -
Prci11g0555 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 448 IPR001650 -
Prci11g0555 508 PANTHER RNA HELICASE 11 460 - -
Prci11g0555 508 Gene3D - 288 494 IPR027417 -
Prci11g0555 508 SMART helicmild6 325 406 IPR001650 -
Prci11g0555 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 428 IPR027417 -
Prci11g0555 508 CDD DEADc_DDX51 14 267 - -
Prci11g0555 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 270 IPR014001 -
Prci11g0555 508 SMART ultradead3 19 289 IPR014001 -
Prci11g0555 508 Pfam DEAD/DEAH box helicase 25 258 IPR011545 GO:0003676|GO:0005524
Prci11g0555 508 Pfam Helicase conserved C-terminal domain 295 406 IPR001650 -
Prci11g0555 508 CDD SF2_C_DEAD 288 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0555 Prci-Chr11 5634532 5642146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0555 43 421 Eukaryotic Initiation Factors Gene Family AT3G13920 23.947 2.68e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0555 K14807 - qsa:O6P43_013012 714.146