Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0554 ATGCCCCCTCGAATGCGTTCCTTGTCTTCACCCCAAAATATGGGCATCTCTAGGCTCTTTCCTGTGCAAGTTGCAGTCTGGGAAGAGACAGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCTACTGGAAGTGGAAAAACTTTAGCTTATGCCCTTCCAATTGTGCAAATGCTGTCAAACCGTATAGTAAGATGCTTGCGTGCTTTAGTGGTGGTGCCCACTCGCGATCTTGCCTTGCAGGTTAAAGAAGTTTTTGATGCCATTGCATCTCCTCTAGGTTTGCATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGCTGATGAGATTACTAATCTTGTGGATGTACCGGGATATGAAGCAGGCATGTGTTATGATCCAGAAGATATATCACTTCAGTACCAACTTGGTTTCCAAAGTAAGGTGGATATATTAGTAGCTACCCCTGGAAGGCTGATGGATCACATCGCTGCTACTAAAGGGTTCACACTTGAGCATCTTTATTATCTTGTAGTTGATGAAACAGATCGACTTCTTCGAGAGGCCTACCAATCCTGGTTACCTACAGTATTGGAGCTGACTCGATCTAAGGACAATAATATTTATCCGCAAGCTGGTCCTTTTCTTCTTAATTCATTTAGTGCATTGAGCACTAGAAGGAGATGTGGTGTTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGCTAGCAAAGATGGTTTTATCTGCAACAATAACCCAGGACCCAGGCAAGCTTGTTCAACTTGATCTACATCACCCAATATTCTTGAAAGCTGGGCAGATGCGTTATAGGCTTCCAGAAAATTTGGAATCACTTAAACTGATCTGTGACACAAAGGTCAAACCATTGTATTTGGCTGCCCTTTTAAAATCATTGGGAGGAGAAAAATGCATAGTGTTTACAAAATCTGTGGATTCAACACATCGTCTGTGCAAATTGCTGCACTATTTTAGTGATCTTCAATTTAAGATCAAGGAGTATTCTAGTCTACAACGTCAACGTGTAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGAGTTTCTAGTGCTAGTGTCTTCTGATGCAATGACCCGTGGAATGGATGTTGAGGGGGTGAGAAATGTTATTAATTATGACGTGCCGAAATACATTAAGACTTATGTTCATCGAGCAGGTAGGACAGCAAGAGCTGGCCAGACTGGACGTTGCTTCACACTGATGTCCAAAGATGAGGCTAGACGATTTAAGAAGTTGTTGCAGAAGGCTGACAACAGTTCTTGCTGTGAGCACACTTTGCCCTCCAGTTTGATTGAAGAACTTCACGCTAATTACCAATCAGCACTGAAAAGATTTAAAGTGACAGTTTTGGAAGCCGGAAAGAAACGCAAGAGCAGTTCAGAGGCGTCCCAAGCAAAGAGGATGAGAAAGAGCACACAGGGGAATAGCTGCTTATACGCTAATCTTGCAGTTTATGATCCTTGGGGAAGACATCCAAGCAAATGA 1515 0.4271 MPPRMRSLSSPQNMGISRLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRIVRCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEITNLVDVPGYEAGMCYDPEDISLQYQLGFQSKVDILVATPGRLMDHIAATKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDNNIYPQAGPFLLNSFSALSTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGQMRYRLPENLESLKLICDTKVKPLYLAALLKSLGGEKCIVFTKSVDSTHRLCKLLHYFSDLQFKIKEYSSLQRQRVRSKTLKEFRKGEFLVLVSSDAMTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEARRFKKLLQKADNSSCCEHTLPSSLIEELHANYQSALKRFKVTVLEAGKKRKSSSEASQAKRMRKSTQGNSCLYANLAVYDPWGRHPSK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0554 504 PANTHER RNA HELICASE 7 456 - -
Prci11g0554 504 SMART ultradead3 15 285 IPR014001 -
Prci11g0554 504 Gene3D - 284 490 IPR027417 -
Prci11g0554 504 Gene3D - 2 269 IPR027417 -
Prci11g0554 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 444 IPR001650 -
Prci11g0554 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 424 IPR027417 -
Prci11g0554 504 SMART helicmild6 321 402 IPR001650 -
Prci11g0554 504 Pfam DEAD/DEAH box helicase 21 254 IPR011545 GO:0003676|GO:0005524
Prci11g0554 504 CDD DEADc_DDX51 12 263 - -
Prci11g0554 504 CDD SF2_C_DEAD 284 410 - -
Prci11g0554 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 31 266 IPR014001 -
Prci11g0554 504 Pfam Helicase conserved C-terminal domain 291 402 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0554 Prci-Chr11 5634532 5642146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0554 39 417 Eukaryotic Initiation Factors Gene Family AT3G13920 23.947 2.66e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0554 K14807 - qsa:O6P43_013012 710.294