Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0509 ATGTATCAACCAAAGACTGTTCCTAATTTAAGTCTAGTTGGCAGCAGTTTATTAGTTCATGGGCAGCATTTAGATTGTGGTGGTAGTTCAATGGATCCTCTCAATGGAGGTAACAATCCTGCTAATAACTCTAATCTCAGCTCAAAGCAACGTTTACGCTGGACACATGAGCTGCATGAACGTTTTGTTGATGCTGTGGCACAACTTGGCGGGCCAGATCGTGCCACACCTAAAGGTGTCCTCAGAGTTATGGGTGTGCAAGGCTTAACAATATATCATGTCAAAAGCCATTTACAGAAATATCGACTTGCAAAATACCTCCCCGATTCATCATCTGATGGAAAAAAAGCTGAAAAGAAGGAAACAGGCGACATGCTTTCCAATCTAGATGGCTCTTCTGGTGGGATGCAAATTACTGAAGCACTGAAGCTACAAATGGAGGTGCAGAAACGATTACATGAGCAATTAGAGGTTCAGAGACAACTTCAACTGCGTATAGAAGCACAGGGTAAATACCTGAAGAAGATAATCGAAGAGCAGCAGCGGCTCGGCGGGGTTCTATCAGACTCGCCTTGCTCGGGGGTTGATGCTCCAGCATCAGCTGATGCATGTCAGGAACCAGAGAATAAGACTGACCCGGCTACCCCAGCTCCAACCTCTGAGTGCCCCCTCCTAGACAAAGCTGGAAAAGAACGCGCCCCAGCAAAGAGTCTGTCTATCGATGAATCGTTTTCATCTCACCACGAACCGTTGACTCCGGAGTCTGGTTGCAATGCCGGCTCGCCTATTGACAGCCCAAGAGGGGAGAGACCGATGAAGAAGCACCGGGTGAGCATGGAGGGAGCATATTCTAAATCAGAAATGATGCTCCCACATCAAATACTGGAGTCAAGCATGCCATCATACCAGCAGTCAAACGATGTTTTCCTTGCCGGAGAGCAGTTTGATCCTTCATTGGGTATGTCTACGAGAAGTGAAGAGGCGTTACAAAAGGTTGGTGGCAGCAATCTGTGA 1014 0.4714 MYQPKTVPNLSLVGSSLLVHGQHLDCGGSSMDPLNGGNNPANNSNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKAEKKETGDMLSNLDGSSGGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVLSDSPCSGVDAPASADACQEPENKTDPATPAPTSECPLLDKAGKERAPAKSLSIDESFSSHHEPLTPESGCNAGSPIDSPRGERPMKKHRVSMEGAYSKSEMMLPHQILESSMPSYQQSNDVFLAGEQFDPSLGMSTRSEEALQKVGGSNL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0509 337 MobiDBLite consensus disorder prediction 109 125 - -
Prci11g0509 337 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Prci11g0509 337 MobiDBLite consensus disorder prediction 109 132 - -
Prci11g0509 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Prci11g0509 337 MobiDBLite consensus disorder prediction 187 283 - -
Prci11g0509 337 MobiDBLite consensus disorder prediction 316 337 - -
Prci11g0509 337 FunFam Myb family transcription factor 48 106 - -
Prci11g0509 337 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Prci11g0509 337 Coils Coil 139 159 - -
Prci11g0509 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Prci11g0509 337 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Prci11g0509 337 Gene3D - 48 107 - -
Prci11g0509 337 MobiDBLite consensus disorder prediction 318 337 - -
Prci11g0509 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 42 328 IPR044848 GO:0003700
Prci11g0509 337 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0509 Prci-Chr11 5256209 5261212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0509 84 337 G2-like Transcription Factor Family AT2G01060 65.882 1.61e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci11g0509 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0509 - - tcc:18597377 493.041