Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0493 ATGAGTCACGCTCACAGCCATAGCCAGGACGACGCGGCCACCACGGCTGCGACCACCACTGCAAAGCTCGACGACGGCCACGAGCTCGACATGGTCATGCCGGGGTTTCGATTTCATCCCACAGAAGAAGAACTCGTGGAATTCTACCTTCGCCGTAAGGTTGAGGGAAAGCGTTTCAATGTCGAGCTCATTACTTTCCTTGATCTCTATCGCTATGACCCCTGGGAGCTTCCTGCCATGGCGGCGATTGGGGAGAAGGAATGGTATTTCTATGTGCCGAGAGATCGAAAGTATCGAAACGGCGATCGGCCGAACCGTGTAACGACGTCGGGATACTGGAAAGCCACCGGAGCTGATAGAATGATCAGAACTGAGAACTTCCGGTCGATTGGGCTCAAGAAAACCCTAGTTTTCTACTCCGGCAAAGCTCCCAAAGGTATCAGAACCAGTTGGATCATGAACGAGTATCGCTTGCCTCATCACGACACTGAACGATACCAGAAGGCTGAGATATCACTGTGTCGTGTGTACAAGAGACCAGGAGTAGAAGACCACCCTTCACTTCCTCGTTGTCTGCCAACGAGGCCATCTTCATCCTCGAGAGCTTCTTCGCACTCATCAGACAAGAGCATCAGCAAGCACAGCAGCGAAACGTTTCATCATCATCATCAACAGAGCAACAACATAGAATTCGTGGGACCAAGTACGATGATGAGTAACTATAATCATCATCGAACGGAGGATCAGTTGGAAAAACCTCTGCAGACGATGATAATAATAATAATCAAGGGGTCTCTATAG 801 0.4994 MSHAHSHSQDDAATTAATTTAKLDDGHELDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHDTERYQKAEISLCRVYKRPGVEDHPSLPRCLPTRPSSSSRASSHSSDKSISKHSSETFHHHHQQSNNIEFVGPSTMMSNYNHHRTEDQLEKPLQTMIIIIIKGSL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0493 266 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 228 - -
Prci11g0493 266 SUPERFAMILY NAC domain 31 179 IPR036093 GO:0003677|GO:0006355
Prci11g0493 266 MobiDBLite consensus disorder prediction 192 206 - -
Prci11g0493 266 FunFam NAC domain-containing protein 35 41 182 - -
Prci11g0493 266 MobiDBLite consensus disorder prediction 207 224 - -
Prci11g0493 266 MobiDBLite consensus disorder prediction 185 240 - -
Prci11g0493 266 MobiDBLite consensus disorder prediction 225 240 - -
Prci11g0493 266 Pfam No apical meristem (NAM) protein 34 158 IPR003441 GO:0003677|GO:0006355
Prci11g0493 266 Gene3D NAC domain 41 182 IPR036093 GO:0003677|GO:0006355
Prci11g0493 266 ProSiteProfiles NAC domain profile. 32 179 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0493 Prci-Chr11 5116722 5118710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0493 31 203 NAC Transcription Factor Family AT2G02450 88.764 3.39e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci11g0493 NAM 6.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0493 - - pcin:129287140 523.472