Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0486 ATGTCTGAATGTTGGGTTTCTGATCCTAGCAAGCTTCACCTGAAGAAGAAGGACCTCACTCAAATTCGTAAAGCTGCTCGTGTGTTGAGGGATCCTGGTACGACGTCGTCCTGGAAGTCACCTCTAAGTTCCTCAAGATCCGTTACTGCTGCTTCTGCTTCTGCATGGAAGAGCAATTTCTACAGTGGAAAAGAGAATGTGTTCTTGTACAACTGGAAGAATCACAAATCATCAGGCGACAACAAGAGTGGACTGGCAAAAAACGACAACGTAGAGGAAGAAGATGATGGTGATGATGAGGATGCTGCTGGTGGCACCGGCAACGATACGTCTTCTTCATCTCTTCTGGGAAGTTTCGAGGATACCTTGAGCGATGCTCGAGGTTGCGATTCGAAGAGCGACTCTCACTTGCGAGTTGGGAGACGTTCTTCTATTTTTCGGTGTACAGATGCTAATCGTGTTTCTTCGGCCAGAAGAAAAATGGGCAGTATCAGGAGAAAGAGTAAGAAAACCAACAGATACTTGAATAATTTGTCAAGATATCGGCAACCAGAAACCAATCTGGGTAGGAAGTTTGTAAATTCCAAGATATTCCCGGAGGACTCAGTTGAACAGTCTGATGACACTGAAGATTACAGCAATTCTGAGGATTTAAGTCGAATTTTAGGGTCATCTCGTTTGCTGTTGAAACTCAAGCGTAGCAATTGGTCTCGTTCTTCCTCAAAGTTACTGAGAAGTAGCCGAACTGAGGACTCTTATTATACTTATAGCACTCCTGCGTTATCAACCTGCTCCCATAATAGGTATGGTCACCATAATTCAAGTACTGTTGGATCCTGGGAAGCCACAGCAAGCTCATTGAATGATGGTGATGATGAGGTAGACGATCATTTGAATTTTCCTGGCCAGAGGGGATGCGGTATTCCTTGCTGTTGGTCCAAGAGGACTCCAAAACATAGGGGGATGTGTAGGAGTTGTTATTCTCCTTCTCTTTCTGAGACTTTGAGGAGGAAAGGAAGTAGCTTATTCTGTGGAAGTAAAAGTATCTATACAAGACACCGAAGGTCCTTATCAAGCTCTAACAAGTGGAGGGTTTCTTCAAGGATTGCTCAGGGTGTTCTCCCATTGCTCCCCAGCAGTGGTGATGTTAGAGGAGGGTCATCTGTAGGAAGTGGGAGGAGTGATGATGAACTTTCCACAAACTTAGGGGAACTTTATCTTGAGGGTTTAAGTAGGTTAGATGGAAGGAGATGGTCATCAAGTTGTAGGAGTCAGGATGGTTTGGGGATTGTGGCTGTAGATGGGGAAGGGGATGAGGAAGGCACACTAGAAAATGCTAGGAGTTTCAGTCAGAAGTATAAGCCTATTTCCTTTGGTGACTTGATTGGCCAGAATATTGTGGTTCAGTCACTTATGAATGCTATTTCAAGGAATAGAATTGCTCCTGTTTATCTTTTCCAAGGTCCTCGTGGTATCGGTAAAACTTCTACGGCCAGAATTTTTGCTGCTGCCCTGAATTGTATGGCTCCAGATGTAAATAAGCCTTGTGGATACTGCAGGAATTGCACTGATCTCAATTCTGGCAAGAGTAGGGATTTCTTGGAAGTTGATGGCACCAATAAGAAAGGGATTGATAGTGTTAGATATCTATTGAAAAGACCATCAGCAGGATCACCGTCAACACCCTCACGATACAACGTATTTGTGATAGATGAGTGTCACTTGCTTCCTTCTAAGACATGGCTGGCATTTCTGAAGTTTCTGGAAGAACCACCTAATCGAGTTGTATTCATACTTATAACAACTGATCTTGACAATGTACCACTAACAATACAATCTCGAAGCCAGAAGTACCTTTTTAACAAAATTAAAGATGCTGATATTGTGGCCAGATTGACGACACTATCTGCTGAGGAGAACCTGGATGTTGAAAAAGATGCACTGGACCTTATTGCTATGAATGCAGATGGTTCACTTCAAGATGCAGAAACTATGTTAGAACAACTGAGTTTGTTGGGGAAGAGAATAACTACATCACTTGTCAATGAACTTGTGGGTGTTATCTCGGATGAAAAATTACTAGAGCTGTTGGAGTTAGCAATGTCATCAGATACCACAGAAACAGTGAAGAGAGCCAGAGAAGTGATAGATTCCGTGGCTGATCCAATGGCTTTGATATCACAAATGGCATGCCTCATTATGGACATCATTGCAGGATCATATGCTGTCATTGATACCAAACCTAGTGATTCGTGTTTTGGTGCACGAAGTTGTTTTCTGGTTGCATATGTTGCATTTGGAGACAGAGATATTAAAATTAGGGCTGAAAGGTTTTTGAGTAGTATTACAAATTCAATGGAAATGGTACTCAGGTGCAACGTGGAGGTTAGAATTATTCACTTGCTTGATGATGAAGGTGAAAATTTAACTGATATCAGACAGGCAGGATCAACAATGGGAAGTGAGAAGTTAAGAAAAGGAAGCCATACAAATGAAAAGGGTAGTCATTCTCGCTTTCCTCCTTTGCTGGATGAAAACTTGCAAGCTGTCATTGGTTCATCAGATTCTATGGCTGAGAGAACCGGTGTGAGAGAGGATGAACAGGTAATTCCTGCACAAAGAGTTGAATCTATTATACGTGAGCAGAGGCTGGAAACTGCTTGGCTACAGGCTGTAGAAAAAGGTTCACCAGGATCATTGAGTCATGCAAGACCTGAGAAGAATCAGGTCCTGCCTCAGGAAAATGTTATCTGTAAAGACCTAATAGAGTCCATTGATTCAACAAGGTTTTCCTCTCAGCATCGGGAAGATGACCTTCATCATGAAGTCAAAGTTTTGAAAGTTAAACATGGAAGGATCCTACAAAATGGAGCCCGATGCCCCATGTCCCCAAGTTTATTGCACGGTAGCAGTTTAGCAAAGAATTCCAGCAAAGACAATCTGGGATATGAGTCAGGTTCCGGAGCTGGAGGTTGCATAGGACTTATATGTTGGAACAATTGCAAGCGGAGAAGAGTAAAGGTGCGAACACAAAATGCTGGGCATTTTACATTATTTAGTGAGTGTGGTAAGTCAATGAAAAAGGAGATCAAGAGGTAA 3099 0.4256 MSECWVSDPSKLHLKKKDLTQIRKAARVLRDPGTTSSWKSPLSSSRSVTAASASAWKSNFYSGKENVFLYNWKNHKSSGDNKSGLAKNDNVEEEDDGDDEDAAGGTGNDTSSSSLLGSFEDTLSDARGCDSKSDSHLRVGRRSSIFRCTDANRVSSARRKMGSIRRKSKKTNRYLNNLSRYRQPETNLGRKFVNSKIFPEDSVEQSDDTEDYSNSEDLSRILGSSRLLLKLKRSNWSRSSSKLLRSSRTEDSYYTYSTPALSTCSHNRYGHHNSSTVGSWEATASSLNDGDDEVDDHLNFPGQRGCGIPCCWSKRTPKHRGMCRSCYSPSLSETLRRKGSSLFCGSKSIYTRHRRSLSSSNKWRVSSRIAQGVLPLLPSSGDVRGGSSVGSGRSDDELSTNLGELYLEGLSRLDGRRWSSSCRSQDGLGIVAVDGEGDEEGTLENARSFSQKYKPISFGDLIGQNIVVQSLMNAISRNRIAPVYLFQGPRGIGKTSTARIFAAALNCMAPDVNKPCGYCRNCTDLNSGKSRDFLEVDGTNKKGIDSVRYLLKRPSAGSPSTPSRYNVFVIDECHLLPSKTWLAFLKFLEEPPNRVVFILITTDLDNVPLTIQSRSQKYLFNKIKDADIVARLTTLSAEENLDVEKDALDLIAMNADGSLQDAETMLEQLSLLGKRITTSLVNELVGVISDEKLLELLELAMSSDTTETVKRAREVIDSVADPMALISQMACLIMDIIAGSYAVIDTKPSDSCFGARSCFLVAYVAFGDRDIKIRAERFLSSITNSMEMVLRCNVEVRIIHLLDDEGENLTDIRQAGSTMGSEKLRKGSHTNEKGSHSRFPPLLDENLQAVIGSSDSMAERTGVREDEQVIPAQRVESIIREQRLETAWLQAVEKGSPGSLSHARPEKNQVLPQENVICKDLIESIDSTRFSSQHREDDLHHEVKVLKVKHGRILQNGARCPMSPSLLHGSSLAKNSSKDNLGYESGSGAGGCIGLICWNNCKRRRVKVRTQNAGHFTLFSECGKSMKKEIKR 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0486 1032 CDD HLD_clamp_pol_III_gamma_tau 623 686 IPR045085 -
Prci11g0486 1032 MobiDBLite consensus disorder prediction 816 839 - -
Prci11g0486 1032 Pfam DNA polymerase III, delta subunit 463 623 - -
Prci11g0486 1032 FunFam DNA polymerase III subunit gamma/tau 444 622 - -
Prci11g0486 1032 MobiDBLite consensus disorder prediction 26 48 - -
Prci11g0486 1032 CDD AAA 462 614 - -
Prci11g0486 1032 SMART AAA_5 480 625 IPR003593 GO:0016887
Prci11g0486 1032 MobiDBLite consensus disorder prediction 33 48 - -
Prci11g0486 1032 Gene3D - 624 686 - -
Prci11g0486 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 670 IPR027417 -
Prci11g0486 1032 Gene3D - 440 621 IPR027417 -
Prci11g0486 1032 FunFam DNA polymerase III subunit gamma/tau 624 686 - -
Prci11g0486 1032 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 451 735 - -
Prci11g0486 1032 NCBIfam DNA polymerase III subunit gamma/tau 448 742 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Prci11g0486 1032 MobiDBLite consensus disorder prediction 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0486 Prci-Chr11 5062372 5069332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0486 451 667 Core DNA Replication Machinery Family AT1G63160 25.688 1.62e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0486 - - pcin:129299269 1394.41