Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0478 ATGGGACTTTCTAGTCAAGAAGAAGTGCCAATCCCAATAAACAGTACTACATACGGCGGGGAACATGGTAATGGCCATGGGCAGGAGGGGCATGGGAATATGGCCCATCATCATCATCATCTTCTCCAACACCTTCAAGACCCTTCTAATGGCTCCTCCATTACGCATCAAGATCAGGACCACGGACCCTACATGAAGAAGAAAGAGGCAAGGTACAGAGAGTGCCTTAAGAATCATGCAGCTTCCATGGGAGGTAATGCCCTTGATGGGTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGCACCATAGAGGCCTTAACCTGCTCAGCCTGCCAGTGTCACAGAAATTTCCACAGAAAAGAAGTAGAAGATGAGCCTTCTTCTTGTTACAAATTTGGAAGGAAATTCATCTTGGGACATCACAAGAATGTCCTAGCAGCCTCCGAAGCTCTTGCAGGGTACCCTACAGGTAACATCTTGCCTTCAAGATCTGTACCACCACACCAGATGATACTTCCCTACAACGTGGGTCCACTTCTTTCAGAATCAGATGAGCAAGAGGGCGTTGGCGGCGGCGGAATGGTGAGCCGGCCAGCATCATCACAGAGAGTGAAGAAGAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAGATGCTGGATTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAGGAAGAATCTGCTGTGCAACAGTTCTGTCAAGAGATTGGAGTCAGAAGAAGAGTGCTCAAGGTTTGGATGCACAACAACAAACACAATCTAGCCAAAAGGAATAATAATCCTCCTCCTCCACCACCACCACCAACAACCACCACAACTGTCTAA 855 0.4807 MGLSSQEEVPIPINSTTYGGEHGNGHGQEGHGNMAHHHHHLLQHLQDPSNGSSITHQDQDHGPYMKKKEARYRECLKNHAASMGGNALDGCGEFMPSGEEGTIEALTCSACQCHRNFHRKEVEDEPSSCYKFGRKFILGHHKNVLAASEALAGYPTGNILPSRSVPPHQMILPYNVGPLLSESDEQEGVGGGGMVSRPASSQRVKKRFRTKFTQEQKEKMLDFAEKVGWKIQKQEESAVQQFCQEIGVRRRVLKVWMHNNKHNLAKRNNNPPPPPPPPTTTTTV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0478 284 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Prci11g0478 284 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Prci11g0478 284 Gene3D - 193 267 - -
Prci11g0478 284 MobiDBLite consensus disorder prediction 1 22 - -
Prci11g0478 284 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
Prci11g0478 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 264 - -
Prci11g0478 284 NCBIfam homeobox domain, ZF-HD class 205 261 IPR006455 -
Prci11g0478 284 FunFam Zinc-finger homeodomain protein 2 194 266 - -
Prci11g0478 284 MobiDBLite consensus disorder prediction 262 284 - -
Prci11g0478 284 SUPERFAMILY Homeodomain-like 193 266 IPR009057 -
Prci11g0478 284 MobiDBLite consensus disorder prediction 268 284 - -
Prci11g0478 284 MobiDBLite consensus disorder prediction 184 205 - -
Prci11g0478 284 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0478 Prci-Chr11 5006345 5008199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0478 71 270 ZF-HD Transcription Factor Family AT2G02540 54.299 7.14e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci11g0478 ZF-HD_dimer 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0478 - - qsa:O6P43_012111 363.999