Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0477 ATGGGACTTTCTAGTCAAGAAGAAGTGCCAATCCCAATAAACAGTACTACATACGGCGGGGAACATGGTAATGGCCATGGGCAGGAGGGGCATGGGAATATGGCCCATCATCATCATCATCTTCTCCAACACCTTCAAGACCCTTCTAATGGCTCCTCCATTACGCATCAAGATCAGGACCACGGACCCTACATGAAGAAGAAAGAGGCAAGGTACAGAGAGTGCCTTAAGAATCATGCAGCTTCCATGGGAGGTAATGCCCTTGATGGGTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGCACCATAGAGGCCTTAACCTGCTCAGCCTGCCAGTGTCACAGAAATTTCCACAGAAAAGAAGTAGAAGATGAGCCTTCTTCTTGTTACAAATTTGGAAGGAAATTCATCTTGGGACATCACAAGAATGTCCTAGCAGCCTCCGAAGCTCTTGCAGGGTACCCTACAGAATCAGATGAGCAAGAGGGCGTTGGCGGCGGCGGAATGGTGAGCCGGCCAGCATCATCACAGAGAGTGAAGAAGAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAGATGCTGGATTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAGGAAGAATCTGCTGTGCAACAGTTCTGTCAAGAGATTGGAGTCAGAAGAAGAGTGCTCAAGGTTTGGATGCACAACAACAAACACAATCTAGCCAAAAGGAATAATAATCCTCCTCCTCCACCACCACCACCAACAACCACCACAACTGTCTAA 780 0.4821 MGLSSQEEVPIPINSTTYGGEHGNGHGQEGHGNMAHHHHHLLQHLQDPSNGSSITHQDQDHGPYMKKKEARYRECLKNHAASMGGNALDGCGEFMPSGEEGTIEALTCSACQCHRNFHRKEVEDEPSSCYKFGRKFILGHHKNVLAASEALAGYPTESDEQEGVGGGGMVSRPASSQRVKKRFRTKFTQEQKEKMLDFAEKVGWKIQKQEESAVQQFCQEIGVRRRVLKVWMHNNKHNLAKRNNNPPPPPPPPTTTTTV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0477 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Prci11g0477 259 FunFam Zinc-finger homeodomain protein 2 169 241 - -
Prci11g0477 259 Gene3D - 168 242 - -
Prci11g0477 259 MobiDBLite consensus disorder prediction 157 180 - -
Prci11g0477 259 MobiDBLite consensus disorder prediction 1 22 - -
Prci11g0477 259 SUPERFAMILY Homeodomain-like 168 241 IPR009057 -
Prci11g0477 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 239 - -
Prci11g0477 259 MobiDBLite consensus disorder prediction 237 259 - -
Prci11g0477 259 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Prci11g0477 259 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
Prci11g0477 259 MobiDBLite consensus disorder prediction 243 259 - -
Prci11g0477 259 NCBIfam homeobox domain, ZF-HD class 180 236 IPR006455 -
Prci11g0477 259 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0477 Prci-Chr11 5006345 5008200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0477 71 245 ZF-HD Transcription Factor Family AT2G02540 56.650 3.20e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci11g0477 ZF-HD_dimer 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0477 - - qsa:O6P43_012111 309.301