Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0472 ATGGCATTTATGGCTTCAAATCAGACACCTGGTGGAAACCAAGCAGGGCCAACCAATGATGATTTATACAAGGAACTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCTCGTGAAGGGGAGCGGGTCTATTATTTTCCGCAAGGGCACATGGAACAGCTTGAGGCATCCATGCATCAAGGAGCAGAGCAACAAATGCCTTCCTTCAACCTGCCATCCAAAATTTTATGCAAAGTGGTCAACGTTCTTCTTCGGGCTGAACCTGACACAGATGAAGTATATGCACAGATAACTTTGCTTCCAGAGCCAGATCAAAGCGAGTTGAGTAGTCCAGATGATCCTCTGCCAGAACCTTCAAGATGCACGGTGCATTCATTTTGCAAAACGCTTACTGCATCTGACACCAGCACTCATGGCGGATTTTCTGTTCTTCGGAGACATGCAGATGAATGTTTGCCTCCCTTGGACATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCACTTTAGACATATTTTCCGAGGGCAACCCAGGCGCCACTTGCTGACTACTGGGTGGAGTGTCTTTGTCAGCTCCAAAAAATTAGTGGCTGGCGATGCATTCATATTCCTGAGAGGTGAAAATGGGGAGCTGCGTGTTGGAGTAAGGAGGCTAATGAGACAGCAAAACAACATGCCATCATCTGTTATATCAAGTCACAGTATGCATCTGGGTGTTTTGGCCACTGCATCTCATGCAATTGCCACTGGAACTCTGTTCTCTGTATTTTACAAGCCAAGAACAAGCCGATCGGAGTTTATTGTTAGTGTCAATAAGTATCTTGAAGCAAAGAGTCACAAGTTTTCCGTTGGGATGAGATTCAAGATGAGGTTTGAAGGTGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACAATTGTTGGGGTTGGAGACAATATCTCACCTGTCTGGGCTGATTCTGAGTGGCGCTCATTAAAGGTTCAATGGGATGAACCCTCTTCGATCTTGCGACCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGAATGCTACCACTGCTGCGAATTCCCAACCAACCCAAAGAAACAAGAGGGCACGTCCTCCTCTGCTGCCATCAGCAGTGCCTGATTCTTTGCATGGTGTCTGGAAATCAGTTGATAAATCTCCACCATTCTCTTATGGTGATGCCCAATACGCACGCGACCTCTATTCATCATCCAAGTTCAATCCTGCTGCTACTAACTTTCTAGGTATTGGTGGGAATAGTCATATGGGGGCTGTTTCTAACAATGCAACTTATTGGTCTAATAGGGTGGAGAACTCTTTGGAGTCAGTAGCCCCTAAAGAATCCACTGAAAAGAGACAAGGCACTGGAAATGGTTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGTAGAAGAAAGTATGCTGCCAGTCACGTTGTCAGGAAGGGTAGGAGATGATAGATCTGCTCGATATGTTGATGTTGAGTCTGATCAGCATTCTGAACCATCAAACGTTAATCGTACTGACTTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCTTGCATTCTCCCCCTGAATCACTAAGCAGGCAAATTAGGAGCTGCACGAAGGTTCACATGCAAGGAATGGCTGTTGGAAGGGCTGTGGATTTGACGCGGTTTGATGGATATGAAGATCTGCTTAAGAAATTGGAGGAGATGTTTGACATCAAGGGTGAGCTTCGTGGATCCAATAGAACTTGGCAGGTTGTCTACACCGATAACGAAAATGATGTGATGATGGTTGGAGATATTCCATGGAATGAGTTCTGTAGTGCTGTGAGGAAAATTTTCATTTACACAGCGGAGGAGGTGAAGAAGCTTTCGCCCAAAGTGCTACTTTCATTTGGTGAAGAAGCTAAAACAGGCAAGCCAGACTCCGAAGCAGCAGTTAATCCTGAGGACCAGGATCAGTCATCTATTGTGGGGCCTGGTTGTTAA 2028 0.4551 MAFMASNQTPGGNQAGPTNDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGAEQQMPSFNLPSKILCKVVNVLLRAEPDTDEVYAQITLLPEPDQSELSSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDNISPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNATTAANSQPTQRNKRARPPLLPSAVPDSLHGVWKSVDKSPPFSYGDAQYARDLYSSSKFNPAATNFLGIGGNSHMGAVSNNATYWSNRVENSLESVAPKESTEKRQGTGNGCRLFGIQLLENSNVEESMLPVTLSGRVGDDRSARYVDVESDQHSEPSNVNRTDFPSVSCDAEKSCLHSPPESLSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLKKLEEMFDIKGELRGSNRTWQVVYTDNENDVMMVGDIPWNEFCSAVRKIFIYTAEEVKKLSPKVLLSFGEEAKTGKPDSEAAVNPEDQDQSSIVGPGC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0472 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Prci11g0472 675 FunFam Auxin response factor 290 362 - -
Prci11g0472 675 Gene3D - 544 638 - -
Prci11g0472 675 MobiDBLite consensus disorder prediction 650 675 - -
Prci11g0472 675 Gene3D - 290 364 - -
Prci11g0472 675 Gene3D - 124 229 IPR015300 -
Prci11g0472 675 MobiDBLite consensus disorder prediction 361 383 - -
Prci11g0472 675 ProSiteProfiles PB1 domain profile. 549 642 IPR000270 GO:0005515
Prci11g0472 675 Pfam AUX/IAA family 550 639 IPR033389 -
Prci11g0472 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Prci11g0472 675 SMART B3_2 127 229 IPR003340 GO:0003677
Prci11g0472 675 FunFam Auxin response factor 125 229 - -
Prci11g0472 675 SUPERFAMILY CAD & PB1 domains 546 626 - -
Prci11g0472 675 SUPERFAMILY DNA-binding pseudobarrel domain 116 256 IPR015300 -
Prci11g0472 675 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Prci11g0472 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci11g0472 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 638 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci11g0472 675 FunFam Auxin response factor 544 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0472 Prci-Chr11 4927893 4935884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0472 4 672 B3 DNA Binding Superfamily AT1G59750 69.242 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci11g0472 B3 4.5e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0472 K14486 - gmx:100793224 1079.7