Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci11g0341 | ATGGAGAGGGATTCATCTGCAGGGTCACACATGAATCATCATGATGAGCAGAAAGAAGAGCAGAATCATCAAGACTTGGAACAGCCTCATCTTGAAGAAGACTATGAGTCTCCGACTTTCAATCTTCAAAATGTTTCAAAAGTGATTCTTCCTCCATTGGGTGCTTCAAGTTATAATCACAATCCAGCTCACCCCAAGGGATGGATCATATCCCCAATGGACACCAGATACGGGTGTTGGGAGAGTTTCATGGTTGTTCTGGTAGGGTACTCAGCATGGGTATATCCCTTTGAAATAGGGTTTCTGATGTCATCTCCAACTCACAAACTCTACATTGTGGATAATGTTGTCGATCTCTTCTTTGGCGTTGACATTGTTCTCACTTTCTTCCTTGCTTACATTGATCGTTCTACTCAACTACTTGTCCGAGACTCCAAACAAATTGCTCTCAGGTACGTATCGACATGGTTCATAATGGATGTGGCATCAAGCATCCCATATGAGGCATTAGGTTATTTGTTCACAGGCAAACGCAAAGTGGGTCTTACTTTCTTCCTCTTGGGCATCCTTAGACTCTGGAGGCTCCGAAGAGTTAAGCAATACTTCACCAGGCTTGAGAAAGATATCAGGTTCAGCTATTTCTGGGTCAGATGTGTTAGACTTCTTTGTGTAACGTTTTTTATAGCACATTGTGGAGGGTGCCTCTACTACTTGCTAGCTGACGTGTACCCTCATCTAGGGAAGACATGGATAGGATCATTGAATCCAGATTTCAAAGAGACAAGCATTTGGATAAGATACATATCAGCCATGTACTGGTCCCTCACCACCATGACTACTGTTGGCTATGGTGATTTTCATGCTGTCAATCCCATGGAGATGGCCTTCACCATTTCTTACATGCTCTTCAATCTTGGCCTCATTGCTTACTTGATTGGCAGCATGACCAATCTTGTTGTTCAAGGAACTTGTCGTACCATGGAATTTAGAAACAACATTGAAGCAGCATCAAATTTTGTGAGCCGAAATAGAGTTTCTCCAAGGCTGAAAGAGCAGATCATTGCTTATATGTGCTTAAGATACAAGGCAGAGAGCTTAAACCATCATCAGCTTATGGAACAATTGCCAAAATCAATATGCAAAACCATTTGTCAACACTTGTTCCTTCCTGCTGCGGAGAAAGTTTATCTTTTTAAAGGTGTCTCAAGGGAGATCTTGTCGTCCTTGGCTGCAAAAATGAAGGCTGAGTATATACCTCCAAAAGAAGATGTTATCATACGGAGTGAAGCACCGGAGGATGTTTACATAATAGTGTCTGGAGAAGTGGAAATCATTGATTCTGAAAACAAAGAGAAAGTTTTAGGGATTTTACAAAGATGGGACATGTTTGGAGAAGTTAGTGCAATTTGTTGTAAGCCTCAAAGCTTTACTTACAGAACCAAGACTCTCACACAACTCTTGAGACTCAAAACTAGTGATTTTATGGAGATAATGCAGACTAAAAAGGAAGACAATATACAAATGCTAAAAAATTTCCTTCAGCACTTGAAGAAGCTTCACGATCTAAATACTAAAGAACTGGTGATTGATTGGAATAGAGAAGATGACCCAAATATGGCTGTGAGCTTGTTAAATGTGGCCTCAACTGGCAATGCTGCTTTTCTTGAAGAGCTTTTAAAGGCAGGCTTGGATTCTAGTGTTGCAGACTCCGAAGGCAAAACCCCATTGCACATAGCAGCATTAAAAGGGCATGAAGAGTGTGTAAAAGTGTTACTTAATCATGCATGCAACGTACATGCAAGAGACATAAATGGCAACACTGCACTATGGGACGCCATAGCTTCAAAGTGTTACTCAATATTCAGAATCCTGTACCAGCTTTCTGCACTATCTGATCCACACACAGCAGGTGATCTCCTCTGTAAAGCAGCAAAGAGAAATGACCTGAAAGTGATGAGTGAGCTTCTAAAGCAAGGCTTAAACATAGAGTCCAAAGATCACCATGGTTCAACAGCAATGCAAGTTGCATTGGAAAAGAATCATGTGGACATGATTCAATTGCTTTTCAAGAACGGCCATGAACATGAAGGAGGAGGGCAAGAGCACGTTTGGGGAAGATATAATAATAATAGGCAAATCTATTCAAGAGTTAGCATATTTAGAGGCCATCCTATATTGAGAAGAGAACAAGGTTGCATTGAAGCTGGCAAGATGATAAGGCTGCCTAACTCAATAGAAGAGCTCAAGAGCATTGCAGGTGAAAGATTTGCCTTTGATGCAAAAGATGCAATAGTAATTGATGAAGGAGGAGCAGAGATAGACTCGATTGATTTGATTAGAGATAATGATAAACTTTTTATTGTTGAATAG | 2370 | 0.4072 | MERDSSAGSHMNHHDEQKEEQNHQDLEQPHLEEDYESPTFNLQNVSKVILPPLGASSYNHNPAHPKGWIISPMDTRYGCWESFMVVLVGYSAWVYPFEIGFLMSSPTHKLYIVDNVVDLFFGVDIVLTFFLAYIDRSTQLLVRDSKQIALRYVSTWFIMDVASSIPYEALGYLFTGKRKVGLTFFLLGILRLWRLRRVKQYFTRLEKDIRFSYFWVRCVRLLCVTFFIAHCGGCLYYLLADVYPHLGKTWIGSLNPDFKETSIWIRYISAMYWSLTTMTTVGYGDFHAVNPMEMAFTISYMLFNLGLIAYLIGSMTNLVVQGTCRTMEFRNNIEAASNFVSRNRVSPRLKEQIIAYMCLRYKAESLNHHQLMEQLPKSICKTICQHLFLPAAEKVYLFKGVSREILSSLAAKMKAEYIPPKEDVIIRSEAPEDVYIIVSGEVEIIDSENKEKVLGILQRWDMFGEVSAICCKPQSFTYRTKTLTQLLRLKTSDFMEIMQTKKEDNIQMLKNFLQHLKKLHDLNTKELVIDWNREDDPNMAVSLLNVASTGNAAFLEELLKAGLDSSVADSEGKTPLHIAALKGHEECVKVLLNHACNVHARDINGNTALWDAIASKCYSIFRILYQLSALSDPHTAGDLLCKAAKRNDLKVMSELLKQGLNIESKDHHGSTAMQVALEKNHVDMIQLLFKNGHEHEGGGQEHVWGRYNNNRQIYSRVSIFRGHPILRREQGCIEAGKMIRLPNSIEELKSIAGERFAFDAKDAIVIDEGGAEIDSIDLIRDNDKLFIVE | 789 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci11g0341 | 789 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 397 | 515 | IPR000595 | - | |
| Prci11g0341 | 789 | CDD | CAP_ED | 397 | 509 | IPR000595 | - | |
| Prci11g0341 | 789 | Pfam | Cyclic nucleotide-binding domain | 421 | 500 | IPR000595 | - | |
| Prci11g0341 | 789 | PRINTS | Ankyrin repeat signature | 651 | 665 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | PRINTS | Ankyrin repeat signature | 572 | 587 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | Gene3D | - | 78 | 321 | - | - | |
| Prci11g0341 | 789 | Gene3D | Jelly Rolls | 365 | 531 | IPR014710 | - | |
| Prci11g0341 | 789 | ProSiteProfiles | Ankyrin repeat region circular profile. | 668 | 692 | - | - | |
| Prci11g0341 | 789 | Pfam | Ankyrin repeats (3 copies) | 546 | 626 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | Gene3D | - | 540 | 701 | IPR036770 | - | |
| Prci11g0341 | 789 | SMART | ANK_2a | 668 | 697 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | SMART | ANK_2a | 604 | 635 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | SMART | ANK_2a | 636 | 664 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | SMART | ANK_2a | 571 | 600 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | ProSiteProfiles | Ankyrin repeat profile. | 668 | 692 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | SMART | cnmp_10 | 397 | 513 | IPR000595 | - | |
| Prci11g0341 | 789 | FunFam | Potassium channel KAT3 | 79 | 321 | - | - | |
| Prci11g0341 | 789 | SUPERFAMILY | Ankyrin repeat | 502 | 693 | IPR036770 | - | |
| Prci11g0341 | 789 | ProSiteProfiles | KHA domain profile. | 716 | 789 | IPR021789 | - | |
| Prci11g0341 | 789 | FunFam | Potassium channel KAT2 | 385 | 520 | - | - | |
| Prci11g0341 | 789 | PRINTS | EAG/ELK/ERG potassium channel family signature | 125 | 134 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci11g0341 | 789 | PRINTS | EAG/ELK/ERG potassium channel family signature | 267 | 284 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci11g0341 | 789 | PRINTS | EAG/ELK/ERG potassium channel family signature | 114 | 124 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci11g0341 | 789 | PRINTS | EAG/ELK/ERG potassium channel family signature | 293 | 304 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci11g0341 | 789 | PANTHER | POTASSIUM CHANNEL AKT1 | 42 | 788 | IPR045319 | GO:0005249|GO:0006813 | |
| Prci11g0341 | 789 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Prci11g0341 | 789 | Pfam | KHA, dimerisation domain of potassium ion channel | 716 | 787 | IPR021789 | - | |
| Prci11g0341 | 789 | ProSiteProfiles | Ankyrin repeat profile. | 571 | 603 | IPR002110 | GO:0005515 | |
| Prci11g0341 | 789 | Pfam | Ion transport protein | 79 | 323 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Prci11g0341 | 789 | ProSiteProfiles | Ankyrin repeat region circular profile. | 571 | 602 | - | - | |
| Prci11g0341 | 789 | SUPERFAMILY | Voltage-gated potassium channels | 72 | 320 | - | - | |
| Prci11g0341 | 789 | SUPERFAMILY | cAMP-binding domain-like | 325 | 516 | IPR018490 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci11g0341 | Prci-Chr11 | 3892959 | 3899607 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci11g0341 | 7 | 576 | Ion Channels | AT4G22200 | 65.391 | 0.0 | 783 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci11g0341 | K21867 | - | gmx:100798422 | 1098.57 |