Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0335 ATGGCCAAGGATACGGCAATGGAGCTTCCTCCTCGTGACGATTGCTGCCCTGTCTGCCATGGCGATTTCAACCTCCCATGCCGCACCTCCTGCTCCCACTGGTTCTGTGGAGAGTGCATATTGCGTGTATGGCTACATGGAGATGCAATGAAGCAATGTAAATGCCCAATGTGCTGTCGTCATTTTTCCAGTCTGGCACCCTTTCAAGCAGCATTTGACTGTGGCCAGAACCCAGAATCGGACAAAATAATGGAAAGTGTTAGAAGGTACAATAGGCTGCACATTGGGGGCATGCAAGGTCTCATGCAGAAACTTTTTGATCTTCCGTTTCTTGTTCGAATGGCTCTACAAGATATGATGGATCCTGATAAAACAAGTTCTTACTTGACTAGAGTGCGCCTCTTTGCAATGGTACTTGGCATGATTTATGTGCTCAACCCATTCGAATTTCTTCCATTCGCTAAACGAGACATACTGAACTTGTTTGATCTCTATGCGACTACATTTGTGACCATCATCCATATTATTGCGCTGTGCCGTGCAAGGCGTGTAATCAGGAGATAA 564 0.461 MAKDTAMELPPRDDCCPVCHGDFNLPCRTSCSHWFCGECILRVWLHGDAMKQCKCPMCCRHFSSLAPFQAAFDCGQNPESDKIMESVRRYNRLHIGGMQGLMQKLFDLPFLVRMALQDMMDPDKTSSYLTRVRLFAMVLGMIYVLNPFEFLPFAKRDILNLFDLYATTFVTIIHIIALCRARRVIRR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0335 187 SMART ring_2 16 58 IPR001841 -
Prci11g0335 187 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Prci11g0335 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Prci11g0335 187 ProSiteProfiles Zinc finger RING-type profile. 16 58 IPR001841 -
Prci11g0335 187 PANTHER UNCHARACTERIZED 5 183 IPR038896 GO:0061630
Prci11g0335 187 Pfam RING-type zinc-finger 16 56 IPR027370 -
Prci11g0335 187 SUPERFAMILY RING/U-box 7 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0335 Prci-Chr11 3848354 3852383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0335 8 137 C3H Transcription Factor Family AT4G33940 46.154 1.36e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0335 K15707 K24166 cave:132168217 243.817