Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0333 ATGAGTGAAACCAATTCAGCCAGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGCCAGTGCACATGAGAACTTTTCGTGTCAAAACAGGTTTTTGACTTTCAATTTTCTGTTCTCCTTGCCAACTCAAAAACCTAGCTCTGAAGAAGCCTTTTGTGGAAGATTTGTATCCTGTCAAAATCAAAATATTCAAAATTTGCAGAGAGCACAAGTTGAGAAGGCTTGGTGTGCACTTTCAAGTCTACAGAATTCTTGCAGGAACTATGCCAAACTGGGAAAAACTGTACATATCAGTCCTCCGGTTCTTGCAGACAAGAGAACAACTACCTGGCAGAGAAGTTCTGAGAATGATAGATGTTCTCCAAAGGTTCATAATTTTAAAGTCTCAAGTGAAAACAATGCCAAATCTAATCAATACCTTCCATCAAGTAATCCTATAGCAGGGGGAGGGGATAGATCAAGGTGCCTTGATGAAGCCACAACTCCAACAGTCAATAATCATTGTTTTCCAGTTTTGGATGGTTCAGCGAACAACTGTACTAATTATACTGCTGAAGTTAACAGGTCAACAAATTGTATGGCTGACAACATTGATGACGATGATGATGACATACTTGGGAACATTGATGTTGACCAAATAGTAGAAAACTACCAGTCGACTTGCACTCCTCAACCATCAATAAGTAAGTTTCCTCCTATTTCTCCAACTGTTGATGCAAATAGTTTTGCTAGACAAGGGGAACATCGTTTACCACTGGAGTTGTGCTTGGATTGCATTCATGGTTATAAGGTAGGGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAGTTGCTTGACAATGTGGACAGCCTCAATTCGTCACAGATAGCAAAGCTTCGACAAGATAGGTCACAGTTAAATAAGAAAATCCAGCAGCTTGAAAGATATATTCATTCCAGCAAGCTTGATGAGGGAAGACAAAACTCACATTTTTCTGCATCCACAGCGCCTCCAACTTCTTTTCAGTTTGAGACACCAAATCAAACTGAACTCAGGAGTGGATCAATGAGATATGATACCCAGGCGTATACAAGTTATGAGCCATCTGGAGCATCATTCCAGTCATTTTCATTCTCTTCTGTTGATAAGTTTGGCATGTCTTCGGGCCCAATGGAGAGAGAGACATTTATTCCAAAGATTATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCGACCAAAATTTTCCCTGGACAAAAAAGCTGGAGGCCAATAATAAAAAGGTTTTTGGAAATCATTCGTTCCGCCCCAATCAGAGAGAGGTTATTAATGCTACAATGAGTGGATGTGATGTTTTTGTCTTAATGCCTACAGGTGGAGGGAAGAGTTTGACCTACCAGCTCCCTGCTCTTATTTGTCCAGGCATAACATTAGTTATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATCCCTGCTACCTACTTAAGTTCCAATATGGATTGGTCCGAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATTGTTGTAAATACAAGTTCTTATATGTAACACCTGAAAAGGTTGCCAAAAGTGATGTTCTTCTGCGGCAATTAGAGAGTTTACATGGTCGTGAGTTGCTGGCAAGGATTGTAATCGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTCCCAAATACTCCTGTTCTAGCTTTGACAGCTACAGCAACTGCCAGTGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGTGTTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAATGTTTGGAGGACATTGATAAATTCATCAGGGAAAATCACTATGATGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGTTGCTGAAAAGTTACAGGAATGTGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCCGCTCAACGGGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGCTACCATCAGGAGTGTGGGCGAGCTGGTAGAGATGGCCTGCGTTCATCATGCGTATTATATTATAGTTATAGTGACTATATACGAGTTAAGCACATGATAACTCAAGGAGCAATCGAGCAAAGTCCAATGACATCTGGATATAATCGATCAAATTTGACAAATTCGGGGAGGTTGTTAGAAACTAACACTGAAAACCTTCTGCGGATGGTAAGCTATTGTGAAAATGATGTTGATTGTCGACGACTTCTGCAGCTTTCTCATTTTGGGGAGAGGTTTGATTCTTCCAGCTGTAAGAAAACATGTGATAACTGCTTGAAGATCAAGAATTTTGTTGAGAAGGATGTCACAGAGATCGCCAAGCAATTGGTTGAACTAGTCAAGATAACGGGGCAGAATTTTTCATCATCTCATATCTTAGAAGTGTACCGTGGTTCCTTGAACCAGATTGTCAAGAAACACCGGCATGAAACTGTACGTTTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTGTCGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCCATATTAAAGGTAAATGAGCTGAAGGCCCGTAATCTGTTTGGTGGCCAGAAAATTATATTAAGATTTCCTTCCTCGGGAAAAGCTGCAAAGTTGGGAACTTCAGGCGTAACACCAGCTAAAGGCTCTGTGACATCCGGGAAGGTGACTTTTCCACAAAATGACACTCCTGCCTCGCCTCAAACTGAAGTGGACTTGAATCTTTCCGCTAAGCTGTACACTGCTCTGCGGATGCTGAGGACAGCTATTGTTAAAGAAGCTGGAGAGGGTGTCATGGCTTACCACATTTTTGGAAATGCTACGCTGCAGCAGATAAGTAAAAAGTTACCGAGAACAAAGGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGGCAAAGATAAGCAAGTATGGAGATCGGTTACTGGAAACCATTGAAAATACCATAAGGGAATATCACAAGCTGGACAAGAATTCCAGCTGGAGCAACGAGAGCAATGACTCTGCTAAAAGGAGACGAGGGTCAAAGGGGGACCCAAACGTAAATGGGGATGATGATGACTGCACTAGAAGTAACGATCGTTCAAAGAAAAGGACGGTAAACAGAAACAATATAAAAGCTGTTGTTTATGATTCTGCAGAAGAAGATTATTTTAAAGATTGCCTAGATGAAGATTTGGATTTAGACAACATAGAAAATACTGCATTGGATATAAATCGTAGGAATTCTGAAGGAAGAGTCCTTCCGCAATGGACATCATGA 3573 0.4075 MSETNSASDGLPKVNWLDHASAHENFSCQNRFLTFNFLFSLPTQKPSSEEAFCGRFVSCQNQNIQNLQRAQVEKAWCALSSLQNSCRNYAKLGKTVHISPPVLADKRTTTWQRSSENDRCSPKVHNFKVSSENNAKSNQYLPSSNPIAGGGDRSRCLDEATTPTVNNHCFPVLDGSANNCTNYTAEVNRSTNCMADNIDDDDDDILGNIDVDQIVENYQSTCTPQPSISKFPPISPTVDANSFARQGEHRLPLELCLDCIHGYKVGLCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRSQLNKKIQQLERYIHSSKLDEGRQNSHFSASTAPPTSFQFETPNQTELRSGSMRYDTQAYTSYEPSGASFQSFSFSSVDKFGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDCCKYKFLYVTPEKVAKSDVLLRQLESLHGRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKVAEKLQECGHKTAFYHGSMDPAQRAFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMITQGAIEQSPMTSGYNRSNLTNSGRLLETNTENLLRMVSYCENDVDCRRLLQLSHFGERFDSSSCKKTCDNCLKIKNFVEKDVTEIAKQLVELVKITGQNFSSSHILEVYRGSLNQIVKKHRHETVRFHGAGKHLAKGEASRVLHHLVVEDFLVEDVKKSDIYGSVSSILKVNELKARNLFGGQKIILRFPSSGKAAKLGTSGVTPAKGSVTSGKVTFPQNDTPASPQTEVDLNLSAKLYTALRMLRTAIVKEAGEGVMAYHIFGNATLQQISKKLPRTKEELLEINGISKAKISKYGDRLLETIENTIREYHKLDKNSSWSNESNDSAKRRRGSKGDPNVNGDDDDCTRSNDRSKKRTVNRNNIKAVVYDSAEEDYFKDCLDEDLDLDNIENTALDINRRNSEGRVLPQWTS 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0333 1190 Gene3D HRDC domain 1006 1094 IPR044876 -
Prci11g0333 1190 SMART RQC_2 859 969 IPR018982 GO:0006260|GO:0006281|GO:0043138
Prci11g0333 1190 FunFam Bloom syndrome, RecQ helicase 634 854 - -
Prci11g0333 1190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 451 626 IPR014001 -
Prci11g0333 1190 MobiDBLite consensus disorder prediction 332 358 - -
Prci11g0333 1190 SUPERFAMILY HRDC-like 1013 1085 IPR010997 GO:0000166|GO:0044237
Prci11g0333 1190 ProSiteProfiles HRDC domain profile. 1010 1092 IPR002121 GO:0003676
Prci11g0333 1190 Gene3D - 857 966 IPR036388 -
Prci11g0333 1190 Pfam Helicase conserved C-terminal domain 650 756 IPR001650 -
Prci11g0333 1190 ProSiteProfiles Rhodanese domain profile. 666 708 IPR001763 -
Prci11g0333 1190 Pfam DEAD/DEAH box helicase 445 613 IPR011545 GO:0003676|GO:0005524
Prci11g0333 1190 CDD SF2_C_RecQ 634 766 - -
Prci11g0333 1190 Coils Coil 301 321 - -
Prci11g0333 1190 SMART hrdc7 1010 1092 IPR002121 GO:0003676
Prci11g0333 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 775 IPR027417 -
Prci11g0333 1190 FunFam ATP-dependent DNA helicase RecQ 416 633 - -
Prci11g0333 1190 CDD DEXHc_RecQ 431 633 - -
Prci11g0333 1190 Pfam HRDC domain 1014 1082 IPR002121 GO:0003676
Prci11g0333 1190 SMART ultradead3 439 642 IPR014001 -
Prci11g0333 1190 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 565 574 IPR002464 -
Prci11g0333 1190 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 651 794 IPR001650 -
Prci11g0333 1190 SMART helicmild6 676 757 IPR001650 -
Prci11g0333 1190 Pfam RecQ zinc-binding 768 850 IPR032284 -
Prci11g0333 1190 PANTHER DNA HELICASE RECQ FAMILY MEMBER 415 1100 - -
Prci11g0333 1190 MobiDBLite consensus disorder prediction 1094 1133 - -
Prci11g0333 1190 Gene3D - 408 633 IPR027417 -
Prci11g0333 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 900 IPR027417 -
Prci11g0333 1190 NCBIfam RecQ family ATP-dependent DNA helicase 435 910 IPR004589 GO:0004386|GO:0006310
Prci11g0333 1190 Gene3D - 634 852 IPR027417 -
Prci11g0333 1190 Pfam RQC domain 856 970 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0333 Prci-Chr11 3835560 3845143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0333 665 788 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 3.16e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0333 K10901 - qsa:O6P43_031507 1699.87