Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0332 ATGAGGCAAGGTGAAACCAATTCAGCCAGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGCCAGTGCACATGAGAACTTTTCGTGTCAAAACAGGTTTTTGACTTTCAATTTTCTGTTCTCCTTGCCAACTCAAAAACCTAGCTCTGAAGAAGCCTTTTGTGGAAGATTTGTATCCTGTCAAAATCAAAATATTCAAAATTTGCAGAGAGCACAAGTTGAGAAGGCTTGGTGTGCACTTTCAAGTCTACAGAATTCTTGCAGGAACTATGCCAAACTGGGAAAAACTGTACATATCAGTCCTCCGGTTCTTGCAGACAAGAGAACAACTACCTGGCAGAGAAGTTCTGAGAATGATAGATGTTCTCCAAAGGTTCATAATTTTAAAGTCTCAAGTGAAAACAATGCCAAATCTAATCAATACCTTCCATCAAGTAATCCTATAGCAGGGGGAGGGGATAGATCAAGGTCAACAAATTGTATGGCTGACAACATTGATGACGATGATGATGACATACTTGGGAACATTGATGTTGACCAAATAGTAGAAAACTACCAGTCGACTTGCACTCCTCAACCATCAATAAGTAAGTTTCCTCCTATTTCTCCAACTGTTGATGCAAATAGTTTTGCTAGACAAGGGGAACATCGTTTACCACTGGAGTTGTGCTTGGATTGCATTCATGGTTATAAGGTAGGGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAGTTGCTTGACAATGTGGACAGCCTCAATTCGTCACAGATAGCAAAGCTTCGACAAGATAGGTCACAGTTAAATAAGAAAATCCAGCAGCTTGAAAGATATATTCATTCCAGCAAGCTTGATGAGGGAAGACAAAACTCACATTTTTCTGCATCCACAGCGCCTCCAACTTCTTTTCAGTTTGAGACACCAAATCAAACTGAACTCAGGAGTGGATCAATGAGATATGATACCCAGGCGTATACAAGTTATGAGCCATCTGGAGCATCATTCCAGTCATTTTCATTCTCTTCTGTTGATAAGTTTGGCATGTCTTCGGGCCCAATGGAGAGAGAGACATTTATTCCAAAGATTATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCGACCAAAATTTTCCCTGGACAAAAAAGCTGGAGGCCAATAATAAAAAGGTTTTTGGAAATCATTCGTTCCGCCCCAATCAGAGAGAGGTTATTAATGCTACAATGAGTGGATGTGATGTTTTTGTCTTAATGCCTACAGGTGGAGGGAAGAGTTTGACCTACCAGCTCCCTGCTCTTATTTGTCCAGGCATAACATTAGTTATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATCCCTGCTACCTACTTAAGTTCCAATATGGATTGGTCCGAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATTGTTGTAAATACAAGTTCTTATATGTAACACCTGAAAAGGTTGCCAAAAGTGATGTTCTTCTGCGGCAATTAGAGAGTTTACATGGTCGTGAGTTGCTGGCAAGGATTGTAATCGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTCCCAAATACTCCTGTTCTAGCTTTGACAGCTACAGCAACTGCCAGTGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGTGTTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAATGTTTGGAGGACATTGATAAATTCATCAGGGAAAATCACTATGATGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGTTGCTGAAAAGTTACAGGAATGTGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCCGCTCAACGGGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGCTACCATCAGGAGTGTGGGCGAGCTGGTAGAGATGGCCTGCGTTCATCATGCGTATTATATTATAGTTATAGTGACTATATACGAGTTAAGCACATGATAACTCAAGGAGCAATCGAGCAAAGTCCAATGACATCTGGATATAATCGATCAAATTTGACAAATTCGGGGAGGTTGTTAGAAACTAACACTGAAAACCTTCTGCGGATGGTAAGCTATTGTGAAAATGATGTTGATTGTCGACGACTTCTGCAGCTTTCTCATTTTGGGGAGAGGTTTGATTCTTCCAGCTGTAAGAAAACATGTGATAACTGCTTGAAGATCAAGAATTTTGTTGAGAAGGATGTCACAGAGATCGCCAAGCAATTGGTTGAACTAGTCAAGATAACGGGGCAGAATTTTTCATCATCTCATATCTTAGAAGTGTACCGTGGTTCCTTGAACCAGATTGTCAAGAAACACCGGCATGAAACTGTACGTTTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTGTCGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCCATATTAAAGGTAAATGAGCTGAAGGCCCGTAATCTGTTTGGTGGCCAGAAAATTATATTAAGATTTCCTTCCTCGGGAAAAGCTGCAAAGTTGGGAACTTCAGGCGTAACACCAGCTAAAGGCTCTGTGACATCCGGGAAGGTGACTTTTCCACAAAATGACACTCCTGCCTCGCCTCAAACTGAAGTGGACTTGAATCTTTCCGCTAAGCTGTACACTGCTCTGCGGATGCTGAGGACAGCTATTGTTAAAGAAGCTGGAGAGGGTGTCATGGCTTACCACATTTTTGGAAATGCTACGCTGCAGCAGATAAGTAAAAAGTTACCGAGAACAAAGGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGGCAAAGATAAGCAAGTATGGAGATCGGTTACTGGAAACCATTGAAAATACCATAAGGGAATATCACAAGCTGGACAAGAATTCCAGCTGGAGCAACGAGAGCAATGACTCTGCTAAAAGGAGACGAGGGTCAAAGGGGGACCCAAACGTAAATGGGGATGATGATGACTGCACTAGAAGTAACGATCGTTCAAAGAAAAGGACGGTAAACAGAAACAATATAAAAGCTGTTGTTTATGATTCTGCAGAAGAAGATTATTTTAAAGATTGCCTAGATGAAGATTTGGATTTAGACAACATAGAAAATACTGCATTGGATATAAATCGTAGGAATTCTGAAGGAAGAGTCCTTCCGCAATGGACATCATGA 3477 0.4084 MRQGETNSASDGLPKVNWLDHASAHENFSCQNRFLTFNFLFSLPTQKPSSEEAFCGRFVSCQNQNIQNLQRAQVEKAWCALSSLQNSCRNYAKLGKTVHISPPVLADKRTTTWQRSSENDRCSPKVHNFKVSSENNAKSNQYLPSSNPIAGGGDRSRSTNCMADNIDDDDDDILGNIDVDQIVENYQSTCTPQPSISKFPPISPTVDANSFARQGEHRLPLELCLDCIHGYKVGLCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRSQLNKKIQQLERYIHSSKLDEGRQNSHFSASTAPPTSFQFETPNQTELRSGSMRYDTQAYTSYEPSGASFQSFSFSSVDKFGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDCCKYKFLYVTPEKVAKSDVLLRQLESLHGRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKVAEKLQECGHKTAFYHGSMDPAQRAFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMITQGAIEQSPMTSGYNRSNLTNSGRLLETNTENLLRMVSYCENDVDCRRLLQLSHFGERFDSSSCKKTCDNCLKIKNFVEKDVTEIAKQLVELVKITGQNFSSSHILEVYRGSLNQIVKKHRHETVRFHGAGKHLAKGEASRVLHHLVVEDFLVEDVKKSDIYGSVSSILKVNELKARNLFGGQKIILRFPSSGKAAKLGTSGVTPAKGSVTSGKVTFPQNDTPASPQTEVDLNLSAKLYTALRMLRTAIVKEAGEGVMAYHIFGNATLQQISKKLPRTKEELLEINGISKAKISKYGDRLLETIENTIREYHKLDKNSSWSNESNDSAKRRRGSKGDPNVNGDDDDCTRSNDRSKKRTVNRNNIKAVVYDSAEEDYFKDCLDEDLDLDNIENTALDINRRNSEGRVLPQWTS 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0332 1158 ProSiteProfiles HRDC domain profile. 978 1060 IPR002121 GO:0003676
Prci11g0332 1158 Pfam DEAD/DEAH box helicase 413 581 IPR011545 GO:0003676|GO:0005524
Prci11g0332 1158 Gene3D - 602 820 IPR027417 -
Prci11g0332 1158 Pfam Helicase conserved C-terminal domain 618 724 IPR001650 -
Prci11g0332 1158 Gene3D - 825 934 IPR036388 -
Prci11g0332 1158 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 533 542 IPR002464 -
Prci11g0332 1158 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 419 594 IPR014001 -
Prci11g0332 1158 Pfam RQC domain 824 938 IPR018982 GO:0006260|GO:0006281|GO:0043138
Prci11g0332 1158 MobiDBLite consensus disorder prediction 137 156 - -
Prci11g0332 1158 MobiDBLite consensus disorder prediction 300 326 - -
Prci11g0332 1158 ProSiteProfiles Rhodanese domain profile. 634 676 IPR001763 -
Prci11g0332 1158 Pfam HRDC domain 982 1050 IPR002121 GO:0003676
Prci11g0332 1158 SMART RQC_2 827 937 IPR018982 GO:0006260|GO:0006281|GO:0043138
Prci11g0332 1158 Coils Coil 269 289 - -
Prci11g0332 1158 Gene3D HRDC domain 974 1062 IPR044876 -
Prci11g0332 1158 CDD SF2_C_RecQ 602 734 - -
Prci11g0332 1158 Gene3D - 376 601 IPR027417 -
Prci11g0332 1158 SMART ultradead3 407 610 IPR014001 -
Prci11g0332 1158 FunFam Bloom syndrome, RecQ helicase 602 822 - -
Prci11g0332 1158 CDD DEXHc_RecQ 399 601 - -
Prci11g0332 1158 SUPERFAMILY HRDC-like 981 1053 IPR010997 GO:0000166|GO:0044237
Prci11g0332 1158 Pfam RecQ zinc-binding 736 818 IPR032284 -
Prci11g0332 1158 SMART hrdc7 978 1060 IPR002121 GO:0003676
Prci11g0332 1158 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 619 762 IPR001650 -
Prci11g0332 1158 MobiDBLite consensus disorder prediction 1062 1101 - -
Prci11g0332 1158 FunFam ATP-dependent DNA helicase RecQ 384 601 - -
Prci11g0332 1158 NCBIfam RecQ family ATP-dependent DNA helicase 403 878 IPR004589 GO:0004386|GO:0006310
Prci11g0332 1158 SMART helicmild6 644 725 IPR001650 -
Prci11g0332 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 868 IPR027417 -
Prci11g0332 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 743 IPR027417 -
Prci11g0332 1158 PANTHER DNA HELICASE RECQ FAMILY MEMBER 383 1065 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0332 Prci-Chr11 3835560 3845143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0332 633 756 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 3.45e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0332 K10901 - qsa:O6P43_031507 1664.82