Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0331 ATGAGGCAAGGTGAAACCAATTCAGCCAGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGCCAGTGCACATGAGAACTTTTCGTGTCAAAACAGGTTTTTGACTTTCAATTTTCTGTTCTCCTTGCCAACTCAAAAACCTAGCTCTGAAGAAGCCTTTTGTGGAAGATTTGTATCCTGTCAAAATCAAAATATTCAAAATTTGCAGAGAGCACAAGTTGAGAAGGCTTGGTGTGCACTTTCAAGTCTACAGAATTCTTGCAGGAACTATGCCAAACTGGGAAAAACTGTACATATCAGTCCTCCGGTTCTTGCAGACAAGAGAACAACTACCTGGCAGAGAAGTTCTGAGAATGATAGATGTTCTCCAAAGGTTCATAATTTTAAAGTCTCAAGTGAAAACAATGCCAAATCTAATCAATACCTTCCATCAAGTAATCCTATAGCAGGGGGAGGGGATAGATCAAGGTGCCTTGATGAAGCCACAACTCCAACAGTCAATAATCATTGTTTTCCAGTTTTGGATGGTTCAGCGAACAACTGTACTAATTATACTGCTGAAGTTAACAGGTCAACAAATTGTATGGCTGACAACATTGATGACGATGATGATGACATACTTGGGAACATTGATGTTGACCAAATAGTAGAAAACTACCAGTCGACTTGCACTCCTCAACCATCAATAAGTAAGTTTCCTCCTATTTCTCCAACTGTTGATGCAAATAGTTTTGCTAGACAAGGGGAACATCGTTTACCACTGGAGTTGTGCTTGGATTGCATTCATGGTTATAAGGTAGGGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAGTTGCTTGACAATGTGGACAGCCTCAATTCGTCACAGATAGCAAAGCTTCGACAAGATAGGTCACAGTTAAATAAGAAAATCCAGCAGCTTGAAAGATATATTCATTCCAGCAAGCTTGATGAGGGAAGACAAAACTCACATTTTTCTGCATCCACAGCGCCTCCAACTTCTTTTCAGTTTGAGACACCAAATCAAACTGAACTCAGGAGTGGATCAATGAGATATGATACCCAGGCGTATACAAGTTATGAGCCATCTGGAGCATCATTCCAGTCATTTTCATTCTCTTCTGTTGATAAGTTTGGCATGTCTTCGGGCCCAATGGAGAGAGAGACATTTATTCCAAAGATTATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCGACCAAAATTTTCCCTGGACAAAAAAGCTGGAGGCCAATAATAAAAAGGTTTTTGGAAATCATTCGTTCCGCCCCAATCAGAGAGAGGTTATTAATGCTACAATGAGTGGATGTGATGTTTTTGTCTTAATGCCTACAGGTGGAGGGAAGAGTTTGACCTACCAGCTCCCTGCTCTTATTTGTCCAGGCATAACATTAGTTATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATCCCTGCTACCTACTTAAGTTCCAATATGGATTGGTCCGAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATTGTTGTAAATACAAGTTCTTATATGTAACACCTGAAAAGGTTGCCAAAAGTGATGTTCTTCTGCGGCAATTAGAGAGTTTACATGGTCGTGAGTTGCTGGCAAGGATTGTAATCGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTCCCAAATACTCCTGTTCTAGCTTTGACAGCTACAGCAACTGCCAGTGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGTGTTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAATGTTTGGAGGACATTGATAAATTCATCAGGGAAAATCACTATGATGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGTTGCTGAAAAGTTACAGGAATGTGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCCGCTCAACGGGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGCTACCATCAGGAGTGTGGGCGAGCTGGTAGAGATGGCCTGCGTTCATCATGCGTATTATATTATAGTTATAGTGACTATATACGAGTTAAGCACATGATAACTCAAGGAGCAATCGAGCAAAGTCCAATGACATCTGGATATAATCGATCAAATTTGACAAATTCGGGGAGGTTGTTAGAAACTAACACTGAAAACCTTCTGCGGATGGTAAGCTATTGTGAAAATGATGTTGATTGTCGACGACTTCTGCAGCTTTCTCATTTTGGGGAGAGGTTTGATTCTTCCAGCTGTAAGAAAACATGTGATAACTGCTTGAAGATCAAGAATTTTGTTGAGAAGGATGTCACAGAGATCGCCAAGCAATTGGTTGAACTAGTCAAGATAACGGGGCAGAATTTTTCATCATCTCATATCTTAGAAGTGTACCGTGGTTCCTTGAACCAGATTGTCAAGAAACACCGGCATGAAACTGTACGTTTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTGTCGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCCATATTAAAGGTAAATGAGCTGAAGGCCCGTAATCTGTTTGGTGGCCAGAAAATTATATTAAGATTTCCTTCCTCGGGAAAAGCTGCAAAGTTGGGAACTTCAGGCGTAACACCAGCTAAAGGCTCTGTGACATCCGGGAAGGTGACTTTTCCACAAAATGACACTCCTGCCTCGCCTCAAACTGAAGTGGACTTGAATCTTTCCGCTAAGCTGTACACTGCTCTGCGGATGCTGAGGACAGCTATTGTTAAAGAAGCTGGAGAGGGTGTCATGGCTTACCACATTTTTGGAAATGCTACGCTGCAGCAGATAAGTAAAAAGTTACCGAGAACAAAGGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGGCAAAGATAAGCAAGTATGGAGATCGGTTACTGGAAACCATTGAAAATACCATAAGGGAATATCACAAGCTGGACAAGAATTCCAGCTGGAGCAACGAGAGCAATGACTCTGCTAAAAGGAGACGAGGGTCAAAGGGGGACCCAAACGTAAATGGGGATGATGATGACTGCACTAGAAGTAACGATCGTTCAAAGAAAAGGACGGTAAACAGAAACAATATAAAAGCTGTTGTTTATGATTCTGCAGAAGAAGATTATTTTAAAGATTGCCTAGATGAAGATTTGGATTTAGACAACATAGAAAATACTGCATTGGATATAAATCGTAGGAATTCTGAAGGAAGAGTCCTTCCGCAATGGACATCATGA 3579 0.4079 MRQGETNSASDGLPKVNWLDHASAHENFSCQNRFLTFNFLFSLPTQKPSSEEAFCGRFVSCQNQNIQNLQRAQVEKAWCALSSLQNSCRNYAKLGKTVHISPPVLADKRTTTWQRSSENDRCSPKVHNFKVSSENNAKSNQYLPSSNPIAGGGDRSRCLDEATTPTVNNHCFPVLDGSANNCTNYTAEVNRSTNCMADNIDDDDDDILGNIDVDQIVENYQSTCTPQPSISKFPPISPTVDANSFARQGEHRLPLELCLDCIHGYKVGLCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRSQLNKKIQQLERYIHSSKLDEGRQNSHFSASTAPPTSFQFETPNQTELRSGSMRYDTQAYTSYEPSGASFQSFSFSSVDKFGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDCCKYKFLYVTPEKVAKSDVLLRQLESLHGRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKVAEKLQECGHKTAFYHGSMDPAQRAFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMITQGAIEQSPMTSGYNRSNLTNSGRLLETNTENLLRMVSYCENDVDCRRLLQLSHFGERFDSSSCKKTCDNCLKIKNFVEKDVTEIAKQLVELVKITGQNFSSSHILEVYRGSLNQIVKKHRHETVRFHGAGKHLAKGEASRVLHHLVVEDFLVEDVKKSDIYGSVSSILKVNELKARNLFGGQKIILRFPSSGKAAKLGTSGVTPAKGSVTSGKVTFPQNDTPASPQTEVDLNLSAKLYTALRMLRTAIVKEAGEGVMAYHIFGNATLQQISKKLPRTKEELLEINGISKAKISKYGDRLLETIENTIREYHKLDKNSSWSNESNDSAKRRRGSKGDPNVNGDDDDCTRSNDRSKKRTVNRNNIKAVVYDSAEEDYFKDCLDEDLDLDNIENTALDINRRNSEGRVLPQWTS 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0331 1192 Gene3D - 410 635 IPR027417 -
Prci11g0331 1192 Pfam Helicase conserved C-terminal domain 652 758 IPR001650 -
Prci11g0331 1192 Pfam RecQ zinc-binding 770 852 IPR032284 -
Prci11g0331 1192 Gene3D - 859 968 IPR036388 -
Prci11g0331 1192 SMART hrdc7 1012 1094 IPR002121 GO:0003676
Prci11g0331 1192 CDD SF2_C_RecQ 636 768 - -
Prci11g0331 1192 Coils Coil 303 323 - -
Prci11g0331 1192 Pfam HRDC domain 1016 1084 IPR002121 GO:0003676
Prci11g0331 1192 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 567 576 IPR002464 -
Prci11g0331 1192 SMART RQC_2 861 971 IPR018982 GO:0006260|GO:0006281|GO:0043138
Prci11g0331 1192 Gene3D HRDC domain 1008 1096 IPR044876 -
Prci11g0331 1192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 653 796 IPR001650 -
Prci11g0331 1192 ProSiteProfiles HRDC domain profile. 1012 1094 IPR002121 GO:0003676
Prci11g0331 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 777 IPR027417 -
Prci11g0331 1192 FunFam ATP-dependent DNA helicase RecQ 418 635 - -
Prci11g0331 1192 Pfam DEAD/DEAH box helicase 447 615 IPR011545 GO:0003676|GO:0005524
Prci11g0331 1192 SMART ultradead3 441 644 IPR014001 -
Prci11g0331 1192 MobiDBLite consensus disorder prediction 1096 1135 - -
Prci11g0331 1192 NCBIfam RecQ family ATP-dependent DNA helicase 437 912 IPR004589 GO:0004386|GO:0006310
Prci11g0331 1192 SUPERFAMILY HRDC-like 1015 1087 IPR010997 GO:0000166|GO:0044237
Prci11g0331 1192 ProSiteProfiles Rhodanese domain profile. 668 710 IPR001763 -
Prci11g0331 1192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 453 628 IPR014001 -
Prci11g0331 1192 SMART helicmild6 678 759 IPR001650 -
Prci11g0331 1192 CDD DEXHc_RecQ 433 635 - -
Prci11g0331 1192 PANTHER DNA HELICASE RECQ FAMILY MEMBER 415 1102 - -
Prci11g0331 1192 Gene3D - 636 854 IPR027417 -
Prci11g0331 1192 FunFam Bloom syndrome, RecQ helicase 636 856 - -
Prci11g0331 1192 Pfam RQC domain 858 972 IPR018982 GO:0006260|GO:0006281|GO:0043138
Prci11g0331 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 902 IPR027417 -
Prci11g0331 1192 MobiDBLite consensus disorder prediction 334 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0331 Prci-Chr11 3835560 3845143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0331 667 790 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 3.00e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0331 K10901 - qsa:O6P43_031507 1705.65