Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0315 ATGGCTCTTTGGAGAGCTCGCGCAGTTTCTTCTGCGTTTTCGAGTATTGGCATTCTTAACTTCCTCAAACCTTTATCATTTCTTAACAATGCTTCTCGAAATTTTGCTTCCGATTCTGCAAACACATATAACCGCAGTGCACGTGAGAGTGTGATGAATCAAATGATGTATTCTGACATAAATTCACAAATTGGGAGTTGCATGCCACTTAACGCTATGAGAATTGGGACAATCATTCATAACATAGAGATGAACCCAGGGCAAGGTGGCAAAATGGTCCGAGCAGCCGGGACTTGTGCGAAGATATTGAAAGATCCTTCATCAAGATATGTCTTAGTGGAACTCCCTTCAAAGAAGACAAAGTTGTTTGATTCCCGTTGCAGGGCTACAATTGGTAGAGCGTCCAATCCAACTCATGGTGATAGGAAGCTTAGGAAGGCTGGGCAGAGCCGGTGGCTTGGTCGAAGGCCAGTAGTTCGAGGAGTGGCCATGAATCCTGTAGACCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAAAGTAGTGGAAAATATGGGAGAGTTTCTGTTTCACCTTGGGGCAAACCGACTAAGAGTGGGTACAAGACTGGCCCTCTAAAGCGCAGAAGGTAA 630 0.4556 MALWRARAVSSAFSSIGILNFLKPLSFLNNASRNFASDSANTYNRSARESVMNQMMYSDINSQIGSCMPLNAMRIGTIIHNIEMNPGQGGKMVRAAGTCAKILKDPSSRYVLVELPSKKTKLFDSRCRATIGRASNPTHGDRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKYGRVSVSPWGKPTKSGYKTGPLKRRR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0315 209 ProSitePatterns Ribosomal protein L2 signature. 157 168 IPR022671 GO:0003735|GO:0005840|GO:0006412
Prci11g0315 209 MobiDBLite consensus disorder prediction 133 209 - -
Prci11g0315 209 Pfam Ribosomal Proteins L2, C-terminal domain 64 193 IPR022669 GO:0003735|GO:0005840|GO:0006412
Prci11g0315 209 SMART Ribosomal_L2_C_2 62 195 IPR022669 GO:0003735|GO:0005840|GO:0006412
Prci11g0315 209 FunFam 50S ribosomal protein L2 135 209 - -
Prci11g0315 209 Gene3D - 53 134 IPR014722 -
Prci11g0315 209 SUPERFAMILY Translation proteins SH3-like domain 64 198 IPR008991 -
Prci11g0315 209 FunFam 60S ribosomal protein L2, mitochondrial 58 134 - -
Prci11g0315 209 Gene3D Ribosomal protein L2, domain 3 135 209 IPR014726 -
Prci11g0315 209 PANTHER RIBOSOMAL PROTEIN L2 57 208 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0315 Prci-Chr11 3366620 3371824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0315 21 174 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 33.951 6.88e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0315 - - pcin:129287040 411.764