Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0313 ATGTCTGGAATTGATCTCAACGTTCCGGCGACTTTCAAGCAAGAGGTGCTATACAAGGAATGTCTGCGAAACCATGCAGCCTCTCTCGGCCATGTAGCTAACGATGGCTGCTATGAGTTTCTCAAACCTAGAACAGACAATACCGTTGACGGTGGTTCCCAAGATGAATTGTTTTGTGCAGTTTGCAAATGCCACCGGAACTTTCACCGGAAACAAGTTGTTTATACTCCTATCATGGAAGTTGACGTGGCAGTCCCCCAGACGACCCACCAGCAGCCAAACTTTCTGACGACAACAGGTGGAGGGCCATCAGCTGATGATATCAACAATAACAACACCATGGAGGAGCCGGCGGTGGTGCCACCACTGAGGAGGAGGAGGAAGACCACCATGATCACGGCGGAGCAACAGAGCCGGCCGGAAAGTTTGATTGAGGAGTAG 441 0.5079 MSGIDLNVPATFKQEVLYKECLRNHAASLGHVANDGCYEFLKPRTDNTVDGGSQDELFCAVCKCHRNFHRKQVVYTPIMEVDVAVPQTTHQQPNFLTTTGGGPSADDINNNNTMEEPAVVPPLRRRRKTTMITAEQQSRPESLIEE 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0313 146 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 141 - -
Prci11g0313 146 MobiDBLite consensus disorder prediction 127 146 - -
Prci11g0313 146 Pfam ZF-HD protein dimerisation region 16 73 IPR006456 -
Prci11g0313 146 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 72 IPR006456 -
Prci11g0313 146 MobiDBLite consensus disorder prediction 90 115 - -
Prci11g0313 146 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0313 Prci-Chr11 3352277 3352826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0313 16 145 ZF-HD Transcription Factor Family AT5G60480 36.029 2.27e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci11g0313 ZF-HD_dimer 6.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0313 - - pcin:129285636 305.449