Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0312 ATGGAGACACAGTTCAGTCACACTCTCTTCGACAGGCATCCTATAATCAAGTCTAAGACTCCCGCCGTTAAATGGGTTAAAGAATGGGTTCCCCAGGATGTTGTTGCCACTGGTGGGAAGTGCATGCTTTTCAGATGGGTAAGAGAGGATTCCTTAAAGTCCTTGAAGGATAAGGAAAAAGAACCATCAGTGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTGCTTTTTCTCTGTAGCTATGACGGCTGTGGGAAAACTTTTATAGATGCTGGAGCTTTGAGAAAGCATTCTCACATCCATGGAGAAAGGCAATTTGTTTGTCACTATGAGGGTTGTGGAAAGAAATTTTTGGATAGTTCAAAGCTGAAAAGACATTTTCTCATCCATACAGGCGAAAGGGCTTATGTATGTCCCATTGAAGGCTGTGGTAAGGCCTTCTCCCTCGATTTCAACCTAAAGTCTCACATGAAGACACATTCACATGAGAACTATCATGTCTGCAAATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTGAAAAATCACATTGCAGCACACCATGAAAAGAATGGGTCTGTGGATCCGAATGGGACAAAGTACAATACACCACCTACAGAGAAGCCAACAAAATCTACAAAACCTTCTGGTGGGGCTTATGCTTCTGCATCATCTGATCGCCCTTTCGTGTGTCCTTATGAAGGGTGTGAAAAGGCCTATATCCATGAATATAAACTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGCGATGAAAATGTTGCAGAGAATGCTCAGGCTAATAACAATGCTGACAATGAATTGGATGAAGCGAGCGACCAAGATGCCTATGGTGGGAAACGATCAAATGGTAGAATTCAGAAGCAAAGTAAGGCCAAACCAAACTTGAAGTTGCCTCCTTCGAAAATTGCACGGCGCAAACCATCGGCAACACCCTCTTCTGCGACCCCGATGAAGGTGATTAAGAAACCTTGGCCAGTGAAGGAAGAAAACTTTGAGGAAGAAGACAGTGAAGAAACAGAGGAGGATCGGGACAACGTTGAAGATGGATGGAGATATGCAGGAAACAACGAGGATGATGATGAAGAAACAGAATATGAAGACTGA 1140 0.4377 METQFSHTLFDRHPIIKSKTPAVKWVKEWVPQDVVATGGKCMLFRWVREDSLKSLKDKEKEPSVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERAYVCPIEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRYAHEYKLKNHIAAHHEKNGSVDPNGTKYNTPPTEKPTKSTKPSGGAYASASSDRPFVCPYEGCEKAYIHEYKLKLHLKREHPGHGDENVAENAQANNNADNELDEASDQDAYGGKRSNGRIQKQSKAKPNLKLPPSKIARRKPSATPSSATPMKVIKKPWPVKEENFEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0312 379 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Prci11g0312 379 FunFam zinc finger transcription factor YY1 77 102 - -
Prci11g0312 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Prci11g0312 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Prci11g0312 379 Gene3D Classic Zinc Finger 202 276 - -
Prci11g0312 379 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Prci11g0312 379 MobiDBLite consensus disorder prediction 190 229 - -
Prci11g0312 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Prci11g0312 379 Gene3D Classic Zinc Finger 77 102 - -
Prci11g0312 379 MobiDBLite consensus disorder prediction 342 356 - -
Prci11g0312 379 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Prci11g0312 379 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Prci11g0312 379 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Prci11g0312 379 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 354 - -
Prci11g0312 379 MobiDBLite consensus disorder prediction 277 379 - -
Prci11g0312 379 FunFam Zinc finger protein 410 134 161 - -
Prci11g0312 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Prci11g0312 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 262 IPR013087 -
Prci11g0312 379 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Prci11g0312 379 ProSitePatterns Zinc finger C2H2 type domain signature. 234 257 IPR013087 -
Prci11g0312 379 FunFam zinc finger transcription factor YY1 163 194 - -
Prci11g0312 379 MobiDBLite consensus disorder prediction 198 223 - -
Prci11g0312 379 FunFam Putative zinc finger protein 143 103 133 - -
Prci11g0312 379 Gene3D Classic Zinc Finger 135 164 - -
Prci11g0312 379 Gene3D Classic Zinc Finger 165 195 - -
Prci11g0312 379 Gene3D Classic Zinc Finger 103 134 - -
Prci11g0312 379 SMART c2h2final6 166 190 IPR013087 -
Prci11g0312 379 SMART c2h2final6 77 101 IPR013087 -
Prci11g0312 379 SMART c2h2final6 232 257 IPR013087 -
Prci11g0312 379 SMART c2h2final6 136 160 IPR013087 -
Prci11g0312 379 SMART c2h2final6 106 130 IPR013087 -
Prci11g0312 379 FunFam Zinc finger transcription factor YY1 207 274 - -
Prci11g0312 379 Coils Coil 265 285 - -
Prci11g0312 379 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Prci11g0312 379 ProSitePatterns Zinc finger C2H2 type domain signature. 138 162 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0312 Prci-Chr11 3343412 3348222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0312 10 365 C2H2 Transcription Factor Family AT4G06634 63.073 5.70e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci11g0312 zf-C2H2 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0312 - - pcin:129287230 704.516