Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0300 ATGAAGAAGGATTCAAAACTCGACGACGAAGCTCAGAAATCCCAACAACAAATAGTGGAGTCTGGTTCAGACTCTGGTTATGAGGATTCTTCTCAAGATCATGGGTCAGAGTATTCAGATACATCATCGGAATTTGAAGATGGAGAAAGTGGTTTATCTGGGAATGAGGATCATTTGGCGGATGATAACTCCGAGGATTCAGAAGCTGGAGAAAGTGGATCGTCTGAAGATGAGGACTTTGTCACCACAGGCGGCAGTCATGCATCTGGCGATGTTAATGGTGAAGAAGATGGAAGTGAGGACTCTGAAATTCATCAGGGAGTTGAGAGTGATTCTTCAGAAGATGAGGTGGCTCCCCGTAATACCATTGGAGATGTCCCTTTGAAGTGGTATGAAGATGAGCCTCATATTGGATATGATTTCAAGGGGAAGAAGATAATGAAGAGGGAAAAGCAAGACAAATTAGATTCCTATCTTGCAAGTACTGATGATCCAAGCAGCTGGCGTAAGTACTATGATGAGCTCAACGATGAGGTAGTGGAAATGACCAAAGAAGAGGCCAAAATCTTCTCGAGACTGATCGATGGTCGAGCACCTCATGCTGACTTTGATCCATATCCGGATTATGTTGACTGGTTTAAATGGGATGATGCCATTCATCCATTGTCTAATGCACCTGAACCAAAAAGAAGATTTATACCTTCAAAATGGGAAGCTAGAAAGGTTGTGAGGTATGTTAGAGCAATTCGTAAGGGATTAATAACTTTTGACAAGCCAAAGGAGGAAGATGGTCCCTATCTCTTGTGGGGGGATGATTCTGGTTCAACAGAAAAATCAAATCATCTGGCTTACATTCCTGCACCAAAGCCAAAAGTTCCTGGCCACGAGGAGTCTTACAATCCTCCTTTAGAGTACATTCCAACCCAAGAAGAAATCAATTCTTATCAGTTGATGGATGAGGAAGACCGCCCTAAGTTTATTCCTAAAAGGTTTACATCTCTAAGAAGCATCCCTGCATATGAGAATTATATGAAGGAACGCTTTGATCGTTGTTTGGATCTATTCTTGTGCCCTCGAGTTCGAAAGAAACGTCTTAATATTGATCCTGAATCTTTGAAGCCAAAGCTTCCAAGTCGAAAGGATCTTAAACCTTACCTGGCATGCTATATTGAGTACAAAGGTCATGAAGATGCCGTTACATCAATTTCTGTTGAAGCTTCAGGGCAATGGATGGCATCAGGTTCAAGTGATGGAACTGTTCGTCTCTGGGATGTTCCAACTGGTAGATGTCTTAGACGGTGGGAGGTTGGTGAAGCTGTTACCTGTGTTGCTTGGAATCCTTTGCCTGATATGCGTATTCTTGCTGTCTCTGTGGGACAAGATTTACTTATGTTGAATGCTGGTTTGGGGGATGAAGAAGAGCAGAAAAAGATTTGTGAGCTTCTCCATGTTGAGTCACCTGCACCAGATAACTCAGACAGCATAACCCCTAGTGTGAGCTGGCTTCAAGATAATAAACACGAAGGTTTAAGGTTAAGGCATTTTAAGACTGTTTCCGCTGTAGAATGGCACCGAAAAGGTGATTACTTTTCAACAGTGATTCCAGCTGGTGAGTCAAGAGCGGTTCTGATTCACCAGTTATCAAAGAAGCTTACGCAAAAGCTTCCATTCAAGTTGCATGGACTTGCTGTTAGGTCAACTTTCCATCCAACCCGTTCCTTCTTCTTTGTTTGTACTAAAAAGACTGTCCGTGTGTATGATCTGTTGAAGACCAAGCTCATAAAAAAGCTTGATACTGGACTTCGTGAAGCCTCCTCCATTGCTGTTCATCCAGCAGGTGATAATCTGATTGTGGGAAGTAAAGAAGGGAAGATGTGTTGGTTTGATATGGATCTTTCATCTAAACCTTACAGAGTTCTTAAGTGTCACCCAAAAGATGTCAACAATGTGGTCTTTCATCGATCATACCCGTTGTTTGCTTCGTGTTCAGATGACAGCACTGCATACGTTTTTCATGGAATGGTTTATTCTGATCTCAATCAAGACCCTCTTATTGTTCCTTTGGAAATTCTCCGTGGCCATACAAGTTCAAATGGAAGAGGGATACTGGACTGTAAATTCCACCCAAGCCTGCCTTGGCTATTCACTGCTGGTGCTGATAGAGTTATTAAACTCTACTGTCATTAA 2187 0.423 MKKDSKLDDEAQKSQQQIVESGSDSGYEDSSQDHGSEYSDTSSEFEDGESGLSGNEDHLADDNSEDSEAGESGSSEDEDFVTTGGSHASGDVNGEEDGSEDSEIHQGVESDSSEDEVAPRNTIGDVPLKWYEDEPHIGYDFKGKKIMKREKQDKLDSYLASTDDPSSWRKYYDELNDEVVEMTKEEAKIFSRLIDGRAPHADFDPYPDYVDWFKWDDAIHPLSNAPEPKRRFIPSKWEARKVVRYVRAIRKGLITFDKPKEEDGPYLLWGDDSGSTEKSNHLAYIPAPKPKVPGHEESYNPPLEYIPTQEEINSYQLMDEEDRPKFIPKRFTSLRSIPAYENYMKERFDRCLDLFLCPRVRKKRLNIDPESLKPKLPSRKDLKPYPXACYIEYKGHEDAVTSISVEASGQWMASGSSDGTVRLWDVPTGRCLRRWEVGEAVTCVAWNPLPDMRILAVSVGQDLLMLNAGLGDEEEQKKICELLHVESPAPDNSDSITPSVSWLQDNKHEGLRLRHFKTVSAVEWHRKGDYFSTVIPAGESRAVLIHQLSKKLTQKLPFKLHGLAVRSTFHPTRSFFFVCTKKTVRVYDLLKTKLIKKLDTGLREASSIAVHPAGDNLIVGSKEGKMCWFDMDLSSKPYRVLKCHPKDVNNVVFHRSYPLFASCSDDSTAYVFHGMVYSDLNQDPLIVPLEILRGHTSSNGRGILDCKFHPSLPWLFTAGADRVIKLYCH 729
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0300 729 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 434 IPR001680 GO:0005515
Prci11g0300 729 MobiDBLite consensus disorder prediction 61 75 - -
Prci11g0300 729 SUPERFAMILY WD40 repeat-like 351 727 IPR036322 GO:0005515
Prci11g0300 729 SMART WD40_4 549 588 IPR001680 GO:0005515
Prci11g0300 729 SMART WD40_4 685 728 IPR001680 GO:0005515
Prci11g0300 729 SMART WD40_4 386 425 IPR001680 GO:0005515
Prci11g0300 729 SMART WD40_4 428 467 IPR001680 GO:0005515
Prci11g0300 729 SMART WD40_4 591 630 IPR001680 GO:0005515
Prci11g0300 729 SMART WD40_4 634 673 IPR001680 GO:0005515
Prci11g0300 729 ProSitePatterns Trp-Asp (WD) repeats signature. 412 426 IPR019775 -
Prci11g0300 729 Pfam BOP1NT (NUC169) domain 131 386 IPR012953 GO:0006364
Prci11g0300 729 MobiDBLite consensus disorder prediction 279 302 - -
Prci11g0300 729 Pfam WD domain, G-beta repeat 636 671 IPR001680 GO:0005515
Prci11g0300 729 Pfam WD domain, G-beta repeat 688 727 IPR001680 GO:0005515
Prci11g0300 729 Pfam WD domain, G-beta repeat 389 425 IPR001680 GO:0005515
Prci11g0300 729 MobiDBLite consensus disorder prediction 1 129 - -
Prci11g0300 729 Gene3D - 376 729 IPR015943 GO:0005515
Prci11g0300 729 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 11 729 IPR028598 GO:0042254
Prci11g0300 729 MobiDBLite consensus disorder prediction 99 118 - -
Prci11g0300 729 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 430 - -
Prci11g0300 729 SMART BOP1NT_2 131 386 IPR012953 GO:0006364
Prci11g0300 729 FunFam Ribosome biogenesis protein BOP1 homolog 376 728 - -
Prci11g0300 729 Hamap Ribosome biogenesis protein @gn(BOP1) [BOP1]. 1 728 IPR028598 GO:0042254
Prci11g0300 729 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci11g0300 Prci-Chr11 3275945 3282177 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0300 393 623 Eukaryotic Initiation Factors Gene Family AT2G46290 24.051 3.72e-06 47.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0300 K14824 - gmx:100803648 1159.44