Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0280 ATGTCATTCCGAAGCATAGTCCGTGATGTAAGGGACAGTTTTGGGAGCTTATCTAGGCGGAGTTTTGATGTCAGGCTGACTGGTCACCACCGAGGAAAGTCTTATGGATCTTTTCAAGATTTGCATGATCAGCCTCTAGTTATTCAAAGTAGCCGGTGGGCAAGCTTACCCCCAGAATTGCTATATGATGTTATTAGAAGGCTTGAAGAGAGTGAGAGCACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGAAGTTTGCCGGTCTTGGAGGAACATGTGCAAGGAACTTGTGAAGAGCCCAGAATTCTGTGGGAAGCTTACTTTCCCTGTGTCGCTGAAGCAGCCTGGACCAAGAGATGGAATGATTCAGTGTTTTATCAAGAGAGATAAATCTAAATTAACATACCGCTTGTTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAGTTTCTCCTATCTGCCAAGAGGACAAGAAGAACAACTTACACAGAGTATGTCATTTCCATGGATGCTGATAACATCTCAAGATCAAGTAGCGCTTACATTGGAAAGCTGAGATCAAATTTTCTCGGTACAAAATTCATAATATATGATACACAGCCACCATACACTTCTGCCCAAATACCCCCTCCGGGGACTGGGAGGACAAGCCGAAGGTTTTATTCCAAAAAGGTCTCACCAAAGGTCCCATCTGGCACTTACAACATAGCTCAGGTGACATATGAATTAAACGTGCTTGGGACACGAGGCCCAAGGAGGATGCACTGTATTATGCATTCAATTCCAGTCTCTGCGCTCGATACAGATGGCACAGTTCCTGGCCAACCAGAGCTGCTTCCTTGCACCCTTGAGGATTCATTCCGTAGCATTTCCTTCTCAAAGTCTCTTGATCACTCTATCGAGTTCAGCAGCGCACGCTTTTCTGACATCGGAGCGTCCTGCAGTAACGATGATGAGGATAACAAGATGAGACCCTTGATCCTGAAGAACAAACCTCCAAGATGGCATGAACAGCTTCAATGCTGGTGCCTCAACTTCCGTGGACGGGTGACAGTTGCTTCTGTCAAGAACTTCCAGTTGATCGCGGCCTCCCAGCCAGCTGCGGGTGCACCCACACCATCTCAGCCGGCCCCACCAGATCATGACAAGATAATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTACCGATATCCTCTATCTGCTTTCCAGGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAG 1287 0.4654 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSYGSFQDLHDQPLVIQSSRWASLPPELLYDVIRRLEESESTWPARKHVVACAEVCRSWRNMCKELVKSPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSKLTYRLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSAYIGKLRSNFLGTKFIIYDTQPPYTSAQIPPPGTGRTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPVSALDTDGTVPGQPELLPCTLEDSFRSISFSKSLDHSIEFSSARFSDIGASCSNDDEDNKMRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPAAGAPTPSQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0280 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Prci11g0280 428 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Prci11g0280 428 PANTHER TUBBY-RELATED 45 426 - -
Prci11g0280 428 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Prci11g0280 428 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Prci11g0280 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Prci11g0280 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Prci11g0280 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Prci11g0280 428 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Prci11g0280 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Prci11g0280 428 FunFam Tubby-like F-box protein 48 101 - -
Prci11g0280 428 FunFam Tubby-like F-box protein 110 428 - -
Prci11g0280 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Prci11g0280 428 Pfam F-box domain 53 99 IPR001810 GO:0005515
Prci11g0280 428 CDD F-box_AtTLP-like 53 97 - -
Prci11g0280 428 Pfam Tub family 114 423 IPR000007 -
Prci11g0280 428 Gene3D Tubby Protein; Chain A 112 422 IPR025659 -
Prci11g0280 428 Gene3D - 48 101 - -
Prci11g0280 428 SUPERFAMILY Tubby C-terminal domain-like 102 428 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0280 Prci-Chr11 3047602 3051723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0280 1 428 TUB Transcription Factor Family AT1G76900 69.181 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci11g0280 Tub 1.8e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0280 K19600 - gmx:100814578 807.364