Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0236 ATGGCTGAAGTAGAAGAGTATCGCTGCTTCATTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAATGGATTCATTTGAAAAGTTTGGAAACCTTCTTGAAGCCCGGGTTGCTGTTGACAAGTTCTCTGGTCGATCTCGTGGTTTTGGATTTGTAACATTTGATGATCAGAAAGCTATGGAAGATGCCATTGAGGCCATGAATGGGCAGAATTTAGATGGTCGAACTATTACTGTTGACAAGGCAAAACCTCAACAAGGATCAGCTAGAGATGATAGTGATCGGTACCGAGAACATGGTCGTGATCGTAATCATTACCGAGATTATGGGGGTGGTCGAGGTTCTAATGGTGGTGAGTGCTTCAAGTGTGGCAAACCTGGTCATTTCGCTAGAGAGTGCCCTGGTGAAGGGGGAAGAGGTGGAAAGTATGGTGGCAGAGAAAGTAGATATGGTGGCAGTGGCGGTGGAGGTCGTTATGGTCCTGATAGGAATGCTGATCGTTATTCTGGTGGGCGATACAGGGATGCTGGTAGACATGGAGATTATGGAAATGATCGATATAGTCGTGATCGCACTGGACCTTATGAGCAGAGAGGAACAGGAGGCTTTCGTTCTGGATAG 624 0.4615 MAEVEEYRCFIGGLSWSTSDRKLMDSFEKFGNLLEARVAVDKFSGRSRGFGFVTFDDQKAMEDAIEAMNGQNLDGRTITVDKAKPQQGSARDDSDRYREHGRDRNHYRDYGGGRGSNGGECFKCGKPGHFARECPGEGGRGGKYGGRESRYGGSGGGGRYGPDRNADRYSGGRYRDAGRHGDYGNDRYSRDRTGPYEQRGTGGFRSG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0236 207 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Prci11g0236 207 MobiDBLite consensus disorder prediction 86 110 - -
Prci11g0236 207 MobiDBLite consensus disorder prediction 72 112 - -
Prci11g0236 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Prci11g0236 207 CDD RRM2_NsCP33_like 8 83 - -
Prci11g0236 207 SUPERFAMILY Retrovirus zinc finger-like domains 112 139 IPR036875 GO:0003676|GO:0008270
Prci11g0236 207 ProSiteProfiles Zinc finger CCHC-type profile. 121 135 IPR001878 GO:0003676|GO:0008270
Prci11g0236 207 MobiDBLite consensus disorder prediction 132 207 - -
Prci11g0236 207 Gene3D - 2 116 IPR012677 -
Prci11g0236 207 SMART rrm1_1 8 81 IPR000504 GO:0003723
Prci11g0236 207 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 202 - -
Prci11g0236 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Prci11g0236 207 MobiDBLite consensus disorder prediction 166 194 - -
Prci11g0236 207 Gene3D - 117 173 - -
Prci11g0236 207 Pfam Zinc knuckle 120 135 IPR001878 GO:0003676|GO:0008270
Prci11g0236 207 SUPERFAMILY RNA-binding domain, RBD 5 115 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0236 Prci-Chr11 2742734 2744887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0236 9 98 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 1.38e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0236 - - gmx:100815224 304.293