Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0110 ATGGGCCTCCATCACCGCAAGATTCTCGAACAAATCTGTTATCTCTACTGCAACATGAAAGATTCCTCTCCTTGTTACAGCTCTGATTGCAAGGCTTGTGTCGTCAAGTGCTCCTCCTCCGTCTACCCGCCGATTTCCTACTCTCCACCGACACCTGTGTCCTTCGACGACTATGCTGGTCTCGATGATCCACGAAAAATCCACCGCAAGATCTCCACCTGGTTGACCGTCGTTATCGCTATTCTCGCCGCCGCTTTTTTCGCCCTCCTCTGCTTCGCAGTCTACCGCCGGTTCTGCTCCGGCCGTTTCAGGAGAAGGAATTCGGAGACGGAGGAGGATCCGCGGGGAGATTTTCTCGACGAAGAGGAGGGTCCTGTGGTGGATCATCCCATATGGTATATTCGAACCCCTGGTCTTCAACAATCGATCATTTCTGCGATTACTGTGTGTAAATACAAGAAAGGCGAAGGGTTGATTGAAGGAACTGAGTGCTCTGTTTGTCTGAGTGAGTTTGAAGAAGACGAGAATCTCAGGCTTTTGCCCAAGTGTAATCACGCTTTTCATCTCCCTTGTATTGATACCTGGCTCCGATCTCACACCAATTGCCCCATGTGCCGAGCTCCGATCGTCACCAACCCCGCCACGGTGATCGCCTCGCCGGAGCCGAATACTGTTAATCCGACTGATTCAGAACAACCCCAGATGGAAACTGTTGAAAATGGAAGTGAAAATAGTGGGGTTGTTGAGAACAGTGATGGTGAACTGAGAAACAGAGATGAGGAGGAAGAAGGAAGAAGGAGAGAAACGGTGGATGAAGAAGAGGTTGAGAATTTGCAGCCAAGAAGAAGATCTGTGTCTCTGGATTCTTCAGCTGTAGAGAAGATCAATCGTATTCTTGCTAGAGCTAATAATAATACTGCTGTGTGTTCAGTAGGCTCATCTTCATCGAAGAGGGTTTCCAAAAGTGGGTCTTCTTCCTTCAGGATGAAGTCTCTTCAGATTGTTGCAGGCACTTCAATGAAGAGATCTCGTTCCTACAATGGCAAACATGTACATCCTTGGTACAGTCGAAGCCAGAGGAAGCCAAGTGCTCCTATTAGAAGCTTTTGA 1110 0.4838 MGLHHRKILEQICYLYCNMKDSSPCYSSDCKACVVKCSSSVYPPISYSPPTPVSFDDYAGLDDPRKIHRKISTWLTVVIAILAAAFFALLCFAVYRRFCSGRFRRRNSETEEDPRGDFLDEEEGPVVDHPIWYIRTPGLQQSIISAITVCKYKKGEGLIEGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPATVIASPEPNTVNPTDSEQPQMETVENGSENSGVVENSDGELRNRDEEEEGRRRETVDEEEVENLQPRRRSVSLDSSAVEKINRILARANNNTAVCSVGSSSSKRVSKSGSSSFRMKSLQIVAGTSMKRSRSYNGKHVHPWYSRSQRKPSAPIRSF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0110 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 213 IPR013083 -
Prci11g0110 369 FunFam RING-H2 finger protein ATL54 139 212 - -
Prci11g0110 369 MobiDBLite consensus disorder prediction 216 251 - -
Prci11g0110 369 Pfam Ring finger domain 163 206 IPR001841 -
Prci11g0110 369 Coils Coil 366 369 - -
Prci11g0110 369 SMART ring_2 164 205 IPR001841 -
Prci11g0110 369 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Prci11g0110 369 PANTHER RING-H2 FINGER PROTEIN ATL16 68 267 IPR044600 GO:0016567|GO:0016740
Prci11g0110 369 CDD RING-H2_EL5-like 163 206 - -
Prci11g0110 369 MobiDBLite consensus disorder prediction 252 281 - -
Prci11g0110 369 MobiDBLite consensus disorder prediction 216 282 - -
Prci11g0110 369 MobiDBLite consensus disorder prediction 335 369 - -
Prci11g0110 369 SUPERFAMILY RING/U-box 158 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0110 Prci-Chr11 1631285 1632946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0110 71 258 C3H Transcription Factor Family AT1G72220 50.000 5.53e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0110 - - pcin:129285126 674.47