Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0098 ATGCCAACAGGGTTCAGATTCAATCCAAAAGATATTGAACTGATCAGAGACTATCTTTACAACAAAGTCACAGGACAAGACTTACCTAGCCAAGGTCGTACTGTAATCGTTGAGCATGATCTTTACGGTTCTGAGAATCCGTGGGAAATGTGGCAACGTTTCCGTGAGAAAGTGGTGAGATCGGGTCATTGTGAAGATCTCTATGTCTTCACAAGACTCAAGAGAAAGAGTCCTCAAGCTAAGAATGTTGAGAGGAAGGTCGGATCAGGCGCTTGGGAAGGTGAAGCTGTTGCCAGAAAGGTCGTAATCCAAAGCCAAACCGGTGACGACGTCGTTGCTGGCTTCATGAGGAGGTTCCGGTTCGAGAAAAGCCGAACCGATCAAGATGGCAAGTGGATCATGCATGAGTATTCGCTTAATCCGTCGCTCTTTCACGACCTCAAAGTGAAAGATTATGTTATATGTCGAATACGAAAAAATGATAGAGCTATTAAACATCAAAATAAAAGAAAAGAGCCTGAAGCAAGCCAACAAAAAAATTATGAAGAGCAGAACAATAATCAAATAATAATCCTGCAAGAGGGCAAGAAGAGACGAAGAACAAAGGCAAAAGGAAATCAAAAAAGAATTTGTGAAGAAAACAAATATAATCAAAGAATAATCCTACCAGAAGATGACAGGAAGAAAAGAACAGGGCCAAAAGAAAATCAACAAAGAATTTGTGAAGAAAATAAAGATAATCAAATAACCCTTGCAACAAATGGGGAAGAAGAGAACAACATGTCGATGGATGAGTTTGCATCGTGGTTGGAGGAAAATATAAGCTTTGATGTTGATGAACAAGAAGAGGAGAAGGAATTTTATAAGCAAGAAGAGACTGACATGTCGATGGATGAGTTTGCTACGTGGTTAGAGACAAACATAAGCTTTGGTGTTGATGAAGAAGCGAAGAAGGAAGAAAATTTCATCCCAGATTTGGATGGTGAGGAATATATAGAAATGCCCATATCAAATATGATGGATCATCTTGAACTCTTTGTTGAAGAAGAGACCAAGTCAACTGTGGACGATTTTAACTCTTGGCTGGACAAATTATTTCGGAAGCAGCCAGGGGAAGGAGAATACCCAGAGATATTACTGCTCTGA 1146 0.3988 MPTGFRFNPKDIELIRDYLYNKVTGQDLPSQGRTVIVEHDLYGSENPWEMWQRFREKVVRSGHCEDLYVFTRLKRKSPQAKNVERKVGSGAWEGEAVARKVVIQSQTGDDVVAGFMRRFRFEKSRTDQDGKWIMHEYSLNPSLFHDLKVKDYVICRIRKNDRAIKHQNKRKEPEASQQKNYEEQNNNQIIILQEGKKRRRTKAKGNQKRICEENKYNQRIILPEDDRKKRTGPKENQQRICEENKDNQITLATNGEEENNMSMDEFASWLEENISFDVDEQEEEKEFYKQEETDMSMDEFATWLETNISFGVDEEAKKEENFIPDLDGEEYIEMPISNMMDHLELFVEEETKSTVDDFNSWLDKLFRKQPGEGEYPEILLL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0098 381 MobiDBLite consensus disorder prediction 221 244 - -
Prci11g0098 381 Coils Coil 278 298 - -
Prci11g0098 381 PANTHER NAC TRANSCRIPTION FACTOR 56 1 228 - -
Prci11g0098 381 MobiDBLite consensus disorder prediction 164 178 - -
Prci11g0098 381 MobiDBLite consensus disorder prediction 164 190 - -
Prci11g0098 381 ProSiteProfiles NAC domain profile. 1 160 IPR003441 GO:0003677|GO:0006355
Prci11g0098 381 MobiDBLite consensus disorder prediction 221 242 - -
Prci11g0098 381 Pfam No apical meristem (NAM) protein 2 139 IPR003441 GO:0003677|GO:0006355
Prci11g0098 381 SUPERFAMILY NAC domain 1 159 IPR036093 GO:0003677|GO:0006355
Prci11g0098 381 Gene3D NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0098 Prci-Chr11 1502788 1507935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0098 1 163 NAC Transcription Factor Family AT3G04070 30.114 3.73e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci11g0098 NAM 8.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0098 - - pcin:129285581 755.362