Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0086 ATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAACATAACAGCGAGGCAAGTGACGTTCTCAAAGAGGAAAAAAGGGCTTTTCAAGAAAGCGAAGGAACTTGCTACGCTCTGTGAAGCTGAGATTGGTCTCATGGTCTTTTCTTCCACCGGAAAGCTCAACGACTATGCCAGCTCAAGTATGCAGCAGATAACTCTGAGACATGATATGCATTTAGGCATGCACAGATCAGATCAACCTTGTATTGATTTGCAGATTGGAAGTGAAAGCTACAATAAGCTGAGCCATGAAATTGAAAAAAGGACTCATGAACTGAGGCAATTGAATGGAGACGAGTTGCAAGATTCCACAATTCAAGAATTACAAAAACTAGAGGAACTGCTTGAAACGGGTTTGATGCGTGTTTCAAAGGCAAAGGATAAAGCAATGATAGATGAGACCTTCGAACTCAAGAGAAAGGGTAAGCAGCTAATGGAAGAGAACAGGAGATTGAAACAGGTTACACTAGAACAAGGACAACCATATGACTCTGTGATCTCGTCCAGCTCATCTGATACTCCTCAACACTTCAAAGATTCTGATACCTCTCTCAAGTTGGGGTTTTATTGA 612 0.4118 MTRKKIEIKKIDNITARQVTFSKRKKGLFKKAKELATLCEAEIGLMVFSSTGKLNDYASSSMQQITLRHDMHLGMHRSDQPCIDLQIGSESYNKLSHEIEKRTHELRQLNGDELQDSTIQELQKLEELLETGLMRVSKAKDKAMIDETFELKRKGKQLMEENRRLKQVTLEQGQPYDSVISSSSSDTPQHFKDSDTSLKLGFY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0086 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0086 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g0086 203 MobiDBLite consensus disorder prediction 179 203 - -
Prci11g0086 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0086 203 Coils Coil 92 112 - -
Prci11g0086 203 Pfam K-box region 90 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0086 203 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Prci11g0086 203 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Prci11g0086 203 Coils Coil 151 171 - -
Prci11g0086 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0086 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0086 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0086 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Prci11g0086 203 Coils Coil 122 142 - -
Prci11g0086 203 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Prci11g0086 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0086 203 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0086 Prci-Chr11 1399802 1415069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0086 1 202 MADS-box Gene Family AT2G22540 42.797 3.04e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0086 K-box 4.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0086 - - qsu:111985104 206.453