Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0085 ATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAACATAGCTGCGAGGCAAGTGGCGTTCTCAAAAAGAAGAAAAGGTCTTTTCAAGAAAGCGAAGGAACTTGCTACGCTCTGTGAAGCTGAGATTGGTCTCATGGTCTTTTCTTCTACTGGAAAGCTCTACGACTATGCTAGCTCAAGTATGCAGCAGGTAACTCAAAAGCATGATATGTATCTAGACCTTCACAGATCCGATCAACCTGCTTTGCCCCTGGAAGATTCAGTACAGATTGGGAGTGAAGGCTACAACAAGCTGCGCTGTGAAGTTGCAGACAAGACTCGTGAACTGAGGGTTCTTCCACTTAGGCAGTTGAATGGGGAAGAGTTGCAAGAATTCTCAGTTCAAGAATTACAAAAACTAGAGGAACTGCTTGAAATGAGTTTGATGCGTGTTTCAAAGGCAAAGGATGAAGTAATTGTAAAAGAGATCCGCCAGCTCAAGAGAAAGGAAAAGCGATTGGTGGAAGAGAACGATAAATTAAAACAGGTGATAGATGAACAAGGACAATCATCTGACTCAGTGATTTTGTCCAACAACTCGCCTGATACTCCTCAATACACTGGGGACTTTGATACATCTCTCAAGCTGGGGTTTCATTGA 642 0.4252 MTRKKIEIKKIDNIAARQVAFSKRRKGLFKKAKELATLCEAEIGLMVFSSTGKLYDYASSSMQQVTQKHDMYLDLHRSDQPALPLEDSVQIGSEGYNKLRCEVADKTRELRVLPLRQLNGEELQEFSVQELQKLEELLEMSLMRVSKAKDEVIVKEIRQLKRKEKRLVEENDKLKQVIDEQGQSSDSVILSNNSPDTPQYTGDFDTSLKLGFH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0085 213 MobiDBLite consensus disorder prediction 184 204 - -
Prci11g0085 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0085 213 Pfam K-box region 115 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0085 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Prci11g0085 213 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Prci11g0085 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0085 213 CDD MADS_MEF2_like 3 65 IPR033896 GO:0000977|GO:0045944
Prci11g0085 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0085 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0085 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0085 213 Coils Coil 131 151 - -
Prci11g0085 213 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Prci11g0085 213 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0085 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0085 213 MobiDBLite consensus disorder prediction 184 213 - -
Prci11g0085 213 Coils Coil 153 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0085 Prci-Chr11 1379945 1395230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0085 1 212 MADS-box Gene Family AT2G22540 39.754 3.17e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0085 K-box 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0085 - - aprc:113860188 192.971