Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0083 ATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAACATAGCTGCGAGGCAAGTGGCGTTCTCAAAAAGAAGAAAAGGTCTTTTCAAGAAAGCGAAGGAACTTGCTACGCTCTGTGAAGCTGAGATTGGTCTCATGGTCTTTTCTTCTACTGGAAAGCTCTACGACTATGCTAGCTCAAGTATGCAGCAGGTAACTCAAAAGCATGATATGTATCTAGACCTTCACAGATCCGATCAACCTGCTTTGCCCCTGGAAGATTCAGTACAGATTGGGAGTGAAGGCTACAACAAGCTGCGCTGTGAAGTTGCAGACAAGACTCGTGAACTGAGGCAGTTGAATGGGGAAGAGTTGCAAGAATTCTCAGTTCAAGAATTACAAAAACTAGAGGAACTGCTTGAAATGAGTTTGATGCGTGTTTCAAAGGCAAAGGATGAAGTAATTGTAAAAGAGATCCGCCAGCTCAAGAGAAAGGAAAAGCGATTGGTGGAAGAGAACGATAAATTAAAACAGGTGATAGATGAACAAGGACAATCATCTGACTCAGTGATTTTGTCCAACAACTCGCCTGATACTCCTCAATACACTGGGGACTTTGATACATCTCTCAAGCTGGGGTTTCATTGA 627 0.4242 MTRKKIEIKKIDNIAARQVAFSKRRKGLFKKAKELATLCEAEIGLMVFSSTGKLYDYASSSMQQVTQKHDMYLDLHRSDQPALPLEDSVQIGSEGYNKLRCEVADKTRELRQLNGEELQEFSVQELQKLEELLEMSLMRVSKAKDEVIVKEIRQLKRKEKRLVEENDKLKQVIDEQGQSSDSVILSNNSPDTPQYTGDFDTSLKLGFH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0083 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0083 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0083 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0083 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0083 208 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0083 208 MobiDBLite consensus disorder prediction 179 208 - -
Prci11g0083 208 Coils Coil 148 175 - -
Prci11g0083 208 Coils Coil 96 116 - -
Prci11g0083 208 MobiDBLite consensus disorder prediction 179 199 - -
Prci11g0083 208 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0083 208 CDD MADS_MEF2_like 3 65 IPR033896 GO:0000977|GO:0045944
Prci11g0083 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0083 208 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Prci11g0083 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Prci11g0083 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0083 208 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Prci11g0083 208 Coils Coil 126 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0083 Prci-Chr11 1379945 1395243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0083 1 207 MADS-box Gene Family AT2G22540 40.586 1.27e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0083 K-box 3.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0083 - - aprc:113860188 199.134