LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g0080	ATGACAAGACAGAAGATAGAAATAAAGAAGATCGATAACATAACAGCGAGGCAAGTAACGTCTTCAAAGAGAAGAAGAGGGCTATTCAAGAAGGCTCATGAACTTGCTACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCTGCTACTGGCAAGCTCTTGAATATGGTAGCTCAAGTATACTGGTTAGGTGTAAGATTTCATGAACCTGCTGTGTTTTCGGTTCTATATGTGCAGCAGGTTATTAAAAGGCGTGATCAGCACTCAGAAATTGAAAGATTATACCATTCATCCATTTTGCAGGTTATTAAAGGCGTGATCAGCACTCAGAAATTGAAAGATTATACCATTCATCCATTTTGGTGA	369	0.3875	MTRQKIEIKKIDNITARQVTSSKRRRGLFKKAHELATLCDAEIALIVFSATGKLLNMVAQVYWLGVRFHEPAVFSVLYVQQVIKRRDQHSEIERLYHSSILQVIKGVISTQKLKDYTIHPFW	122

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g0080	122	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Prci11g0080	122	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	57	-	-
	Prci11g0080	122	Gene3D	-	14	106	IPR036879	GO:0003677\|GO:0046983
	Prci11g0080	122	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Prci11g0080	122	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Prci11g0080	122	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Prci11g0080	122	SUPERFAMILY	SRF-like	1	57	IPR036879	GO:0003677\|GO:0046983
	Prci11g0080	122	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Prci11g0080	122	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	54	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g0080	Prci-Chr11	1271662	1275978	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g0080	1	54	MADS-box Gene Family	AT4G24540	79.630	7.90e-25	92.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Prci11g0080		SRF-TF	1.6e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g0080	-		-	pcin:129285971	102.834