Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0079 ATGACAAGGCAGAAGATAGAAATAAAGAAGATCGACAACATAACAGCAAGGCAAGTAACGTTTTCGAAGAGAAGAAGAGGGCTATTCAAGAAGGCTAATGAACTTGCTACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCTGCTACTGGCAAGCTCTTTGAATATGGTAGCTCAAGTGTGCAGCAGGTTATCGAAAGGCACGATCAGCACTCAGAAATTGAAAGATTATACCATTCATCCATTTTGTATGAAAAGGAAACCTTCAGCATGCTCAGCATGGAAGAAGCCAATAAGGTTCAGGAACTGAGGCAGTTGAAGGGAGAAGAGCTTGAAGGATTGAGCACGAATGAATTACAGAAGCTTGAAGAACAATTAGAAAAAGGTTTGAGCCGTGTTGTCAAAGCTAAGGAAGAAATAATTATGAAAGAGATCAATGCGCTCAAGAGAAAGGGAATCCAGCTGATGGAGGAGAATCAGAGATTGAAACAGGTGACGAAAGTTGGACAAACACAGGGTCAGTCGTCTGAGTCAGCAACTATCGGCAGCACATCTGATCCTCTCCATGAGGATCATAGTTCAGACACCTCTCTCAGATTGGGATTGTCTTTGTTCAACTAA 624 0.4199 MTRQKIEIKKIDNITARQVTFSKRRRGLFKKANELATLCDAEIALIVFSATGKLFEYGSSSVQQVIERHDQHSEIERLYHSSILYEKETFSMLSMEEANKVQELRQLKGEELEGLSTNELQKLEEQLEKGLSRVVKAKEEIIMKEINALKRKGIQLMEENQRLKQVTKVGQTQGQSSESATIGSTSDPLHEDHSSDTSLRLGLSLFN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0079 207 FunFam Transcription factor, MADS-box 13 82 - -
Prci11g0079 207 ProSiteProfiles K-box domain profile. 83 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0079 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0079 207 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Prci11g0079 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0079 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g0079 207 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Prci11g0079 207 MobiDBLite consensus disorder prediction 165 188 - -
Prci11g0079 207 Coils Coil 120 140 - -
Prci11g0079 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0079 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0079 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0079 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0079 207 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0079 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Prci11g0079 207 Pfam K-box region 87 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0079 207 Coils Coil 146 166 - -
Prci11g0079 207 MobiDBLite consensus disorder prediction 165 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0079 Prci-Chr11 1252738 1261313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0079 1 204 MADS-box Gene Family AT2G22540 50.000 2.37e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0079 K-box 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0079 - - qsu:111985104 223.016