Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0078 ATGACAAGGCAGAAGATAGAAATAAAGAAGATCGATAACATTACAGCGAGGCAAGTAACGTTTTCAAAGAGAAGAAGAGGGCTATTCAAGAAGGCTCAGGAACTTGCTACTCTCTGTGATGCTGAGATTGCCCTCATAGTCTTTTCTGCCACTGGCAAGCTCTCTGAATATAGTAGCTCAAGTGTGCAGCAGGTTATCGAAAGGCACGATCAGCACTCAGAAATTGAAAGATTATACCATTCATCCATTTTGTATGAAAAGGAAACCTTCAGCATTCTCAGCATGGAAGAAGCCAATAAGGTTCAGGAACTGAGGCAGTTGAAAGGAGAAGAGCTTGAAGAATTGAAAACGAATGAATTAAAGAAGCTTGAAGAACAACTAGAAAAAGGTTTGAGCCGTGTTGTCAAAGCTAAGGAAGAAATAATTATGAAAGAGATCAATGCGCTCAAGAGAAAGGGAATCCAGCTGATGGAGGAGAATCAGAGATTGAAACAGGTGACGAAAGTTGGACAAAAACAAGGTCAGTCATCTGAGTCAGCAACTATCGGCAGCACATCTGATCCTCTCCATGAGGATCATAGTTCAGACACCTCTCTCAGATTGGGATTGTCTTTGTTCAACTAA 624 0.4119 MTRQKIEIKKIDNITARQVTFSKRRRGLFKKAQELATLCDAEIALIVFSATGKLSEYSSSSVQQVIERHDQHSEIERLYHSSILYEKETFSILSMEEANKVQELRQLKGEELEELKTNELKKLEEQLEKGLSRVVKAKEEIIMKEINALKRKGIQLMEENQRLKQVTKVGQKQGQSSESATIGSTSDPLHEDHSSDTSLRLGLSLFN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0078 207 Pfam K-box region 88 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0078 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g0078 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0078 207 MobiDBLite consensus disorder prediction 165 188 - -
Prci11g0078 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0078 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0078 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0078 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0078 207 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0078 207 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Prci11g0078 207 ProSiteProfiles K-box domain profile. 83 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0078 207 FunFam Transcription factor, MADS-box 13 82 - -
Prci11g0078 207 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Prci11g0078 207 Coils Coil 146 166 - -
Prci11g0078 207 Coils Coil 98 140 - -
Prci11g0078 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0078 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Prci11g0078 207 MobiDBLite consensus disorder prediction 165 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0078 Prci-Chr11 1204928 1213862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0078 1 204 MADS-box Gene Family AT2G22540 47.679 2.30e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0078 K-box 5.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0078 - - aew:130754368 186.037