Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0069 ATGACAAGGCAGAAGATAGAAATAAAGAAGATCGATAACATAACAGCGAGGCAAGTAACGTTTTCAAAGAGAAGAAGAGGGCTATTCAAGAAGGCTCATGAACTTGCTACTCTCTGTGATGTTGAGATTGCTCTCATAGTCTTTTCTGCCACTGGCAAGCTCTCTGAATATAGTAGCTCAAGTGTGCAGCGGGTCATCGAAAGGCACGATCAGCATTCAGAAATTGAAAGATTATACCATTCATCCATTTTTCATGAAAAGGAAACCTTTAGCATGCTCAGCATGGAAGAAGCCAATAAGGTTCAGGAACTGAGGCAGTTGAAGGGAGAAGAGCTTGAAGGATTGAACACGAATGAATTACAGAAGCTTGAAGAACAATTAGAAAAAGGTTTGAGCCGTGTTGTCAAAGCTAAGGAAGAAATAATTATGAAAGAGATCAATGCGCTCAAGAGAAAGGGAATCCAGCTGATGGAGGAGAATCAGAGATTGAAACAGGTGATGAAAGTTGGACAAAAACAAGGTCAGTCATCTGAGTCAGCAACTATCGGCAGCACATCTGATTCTCTTCATGAGGATGATAGTTCAGACACCTCTCTCACATTGGGATTGTCTTTGCTCAGATAA 624 0.4103 MTRQKIEIKKIDNITARQVTFSKRRRGLFKKAHELATLCDVEIALIVFSATGKLSEYSSSSVQRVIERHDQHSEIERLYHSSIFHEKETFSMLSMEEANKVQELRQLKGEELEGLNTNELQKLEEQLEKGLSRVVKAKEEIIMKEINALKRKGIQLMEENQRLKQVMKVGQKQGQSSESATIGSTSDSLHEDDSSDTSLTLGLSLLR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0069 207 MobiDBLite consensus disorder prediction 168 188 - -
Prci11g0069 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0069 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0069 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0069 207 ProSiteProfiles K-box domain profile. 83 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0069 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g0069 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0069 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0069 207 Coils Coil 120 140 - -
Prci11g0069 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0069 207 FunFam Transcription factor, MADS-box 13 82 - -
Prci11g0069 207 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Prci11g0069 207 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0069 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Prci11g0069 207 Pfam K-box region 87 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0069 207 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Prci11g0069 207 Coils Coil 146 166 - -
Prci11g0069 207 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0069 Prci-Chr11 1115881 1124757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0069 1 204 MADS-box Gene Family AT2G22540 47.257 4.42e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0069 K-box 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0069 - - rcu:8266867 190.66