Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0065 ATGACGAGAAGGAAGATACCGATAAAGAAAATAGACAACGTAACAGCAAGACAAGTGACTTTCTCAAAGAGAAGGAGAGGTCTCTTCAAGAAGGCACATGAACTCTCAATTCTCTGTGATGCTGACATTGCCCTCTTGGTCTTCTCTTCCACCGGCAAGCTCTTTGATTATGCTAGCTCAAGTATTCAGCAGGTTATAGAAAGGTATGATCAACATTCAGCCATTCAAATACAAGGCAAATCATCTGTTAATCTGCAGCTTGAAGGTGATGAGAACGAGCTGCAGAAGGTAGTAGCGCAAAAGACTCATGAATTGAGGCAGCTGAATGGGGAAGAGCTTCAAGGATGCACACTTGAAGAATTGCAGACGCTAGAGGAGAGACTTGAAAGAGGCTTGTCCCGTCTTTCAAAAACAAAGGATGAAAGAATCTTAATACAGATCAATGCACTCAAGAAAAAGGGAATCCAACTCATGAAAGAAAACCGAAGAATGAAGCAGAGCCTTGTGCATGAACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACATTAATCCTCCTCAAGACTGCGGTAGTTCTGATAAGTCTCTCAGGCTTGGGTTGTCTTTATTCAAATAA 627 0.4211 MTRRKIPIKKIDNVTARQVTFSKRRRGLFKKAHELSILCDADIALLVFSSTGKLFDYASSSIQQVIERYDQHSAIQIQGKSSVNLQLEGDENELQKVVAQKTHELRQLNGEELQGCTLEELQTLEERLERGLSRLSKTKDERILIQINALKKKGIQLMKENRRMKQSLVHEQGQSSESIIICSSSDINPPQDCGSSDKSLRLGLSLFK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0065 208 FunFam Transcription factor, MADS-box 13 82 - -
Prci11g0065 208 Coils Coil 118 141 - -
Prci11g0065 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g0065 208 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0065 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Prci11g0065 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0065 208 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Prci11g0065 208 Pfam K-box region 90 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0065 208 Coils Coil 91 111 - -
Prci11g0065 208 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0065 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0065 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0065 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0065 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0065 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0065 208 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0065 Prci-Chr11 997428 1008069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0065 1 204 MADS-box Gene Family AT2G22540 49.367 1.21e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0065 K-box 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0065 - - pcin:129285573 253.832