Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0063 ATGACGAGAAGAAAGATACAGATAAAGAAAATAGACAGTGTAACAGCAAGACAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACATGAACTCTCAACTCTCTGTGATGCTGAGATTGCTCTCTTGGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAGCTCAAGTATTCAGCAGGCAATTGAAGGTATGATCAACATTCAGCCATTCAAATACAAGCTTCAAGGATGCACGCTTGAAGAATTGCAGACACTAGAGGAAAGACTTGAAAGGGACTTGTCCCGTGTTTCAAAAACAAAGGATGAAAGAATCTTAAAACAAATCAATGCACTTAAGAGAAAGGGAATCCAACTCAAGGAAGAAAACCAAAGAATGAGGCAGAGCCTTGTGCATGAACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACATTAATCCTCCTCAAGACTGTGATAGTTCTGATACATCTCTCAGGCTTGGGTAA 510 0.4098 MTRRKIQIKKIDSVTARQVAFSKRRKGLFKKAHELSTLCDAEIALLVFSSTGKLFDYASSSIQQAIEGMINIQPFKYKLQGCTLEELQTLEERLERDLSRVSKTKDERILKQINALKRKGIQLKEENQRMRQSLVHEQGQSSESIIICSSSDINPPQDCDSSDTSLRLG 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0063 169 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 129 - -
Prci11g0063 169 Coils Coil 113 133 - -
Prci11g0063 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0063 169 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Prci11g0063 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0063 169 Coils Coil 84 107 - -
Prci11g0063 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0063 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0063 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0063 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0063 169 CDD MADS_MEF2_like 3 67 IPR033896 GO:0000977|GO:0045944
Prci11g0063 169 MobiDBLite consensus disorder prediction 149 169 - -
Prci11g0063 169 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Prci11g0063 169 Pfam K-box region 78 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0063 169 ProSiteProfiles K-box domain profile. 41 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0063 Prci-Chr11 972056 977665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0063 1 169 MADS-box Gene Family AT2G22540 40.928 4.48e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0063 K-box 4.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0063 - - pcin:129285578 301.597