Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0062 ATGACGAGAAGAAAGATAGCGATAGAGAAAATAGAGAACGTAGCAGCGAGGCAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCCATGGAGCTCTCTACTCTCTGTGACGCTGAGATTGCACTCTTCGTGTTTTCTGCTTCTGGCAAACTCTTTGATTACTCTAGTACAAGCATGAGGCAGGTTATTGAAAGGAGAAACTTGTACTCGGATGTGAACCTTGTCAAGTCATTGCCAGCCATCCCAAGAGTTGCAGGTAATTATACAGGTTGCAGGTGA 288 0.4444 MTRRKIAIEKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYSSTSMRQVIERRNLYSDVNLVKSLPAIPRVAGNYTGCR 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0062 95 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0062 95 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0062 95 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0062 95 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Prci11g0062 95 PANTHER MADS BOX PROTEIN 3 70 - -
Prci11g0062 95 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Prci11g0062 95 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0062 95 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0062 95 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0062 95 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0062 Prci-Chr11 940775 948847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0062 1 73 MADS-box Gene Family AT2G22540 64.384 8.32e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci11g0062 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0062 - - pcin:129285682 122.479