Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0056 ATGACGAGAAGAAAGAAGCAGATAAAGAAAATAGACAGTGTAACAGCAAGACAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCCCATGAACTCTCAACTCTCTGTGATGCTGAGATTGCTCCCTTGGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAGCTCAAGCATTCAGCAGGAAATTGAATGGTATGATCAACATTCAGCCATTCAAATACAAGGTGATGAGAACGAGCTGCACAAGGCAGTAGTAGCAGAAAAGACTCGTGAATTGAGGCAGCTGAATGACGAAGAGCTTCAAGGATGCACACTTGAAGAATTGCAGACGCTAGAGGAAAGACTTGAAAGGGGCTTGTCCCGTGTTTCAAAAACAAAGGATGAAAGAATCTTAAAACAAATCAATGCACTTAAGAGAAAGGGAATCCAACTCAAGGAAGAAAACCAAAGAATGAAGCAGAGCCTTGTGCATGGACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACATTAATCCTCCTCAAGACTCTGATAGTTCTGATACATCTCTCAGGCTTGGGCAATTAATTAGTTTATCTACTTTGTTGTAA 612 0.4167 MTRRKKQIKKIDSVTARQVAFSKRRKGLFKKAHELSTLCDAEIAPLVFSSTGKLFDYASSSIQQEIEWYDQHSAIQIQGDENELHKAVVAEKTRELRQLNDEELQGCTLEELQTLEERLERGLSRVSKTKDERILKQINALKRKGIQLKEENQRMKQSLVHGQGQSSESIIICSSSDINPPQDSDSSDTSLRLGQLISLSTLL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0056 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0056 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 153 - -
Prci11g0056 203 Pfam K-box region 87 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0056 203 Coils Coil 109 132 - -
Prci11g0056 203 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Prci11g0056 203 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Prci11g0056 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0056 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0056 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0056 203 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0056 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0056 203 Coils Coil 82 102 - -
Prci11g0056 203 ProSiteProfiles K-box domain profile. 75 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0056 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0056 203 Coils Coil 138 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0056 Prci-Chr11 922271 929106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0056 1 194 MADS-box Gene Family AT2G22540 44.492 8.36e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0056 K-box 6.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0056 - - pcin:129285573 276.559