Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0055 ATGACGAGAAGGAAAATACAGATAAAGAAAATAGACAGTGTAACAGCAAGACAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACATGAACTCTCAACTCTCTGTGATGCTGAGATTGCTCTCTTGGTCTTCTCTTCCACTGGCAAGCTTTATGACTATGCTAGCTCAAGTATTCAGCAGGTAATAGAAAGGTATGATCAACATTCAGCCATTCAAATACAAGGCAAACCATCTGTTGATCTGCAGCTCGAAGGTGATGAGAAGGAGCTGCACAAGGTAGTAGTAGCAGAAAAGACTCGTGAATTGAGGCAGCTGAATGGGGAAGAGCTTCAAGGATGCACACGAAGAATTGCAGACACTAGAGGAAAGACTTGA 387 0.4264 MTRRKIQIKKIDSVTARQVTFSKRRKGLFKKAHELSTLCDAEIALLVFSSTGKLYDYASSSIQQVIERYDQHSAIQIQGKPSVDLQLEGDEKELHKVVVAEKTRELRQLNGEELQGCTRRIADTRGKT 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0055 128 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0055 128 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0055 128 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0055 128 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Prci11g0055 128 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g0055 128 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0055 128 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Prci11g0055 128 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0055 128 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0055 128 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0055 128 FunFam Transcription factor, MADS-box 13 82 - -
Prci11g0055 128 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0055 Prci-Chr11 898461 903656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0055 1 116 MADS-box Gene Family AT2G22540 56.303 4.87e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci11g0055 SRF-TF 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0055 - - pcin:129285971 249.595