Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0052 ATGACGAGAAGAAAGATACAGATAAAGAAAATAGACAGTGTAACAGCAAGACAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTCCTCAAGAAGGCACATGAACTCTCAATTCTCTGTGATGCCGAGATTGCTCTCTTGGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAACTCAAGTATTCAGCAGGTAATTGAAAGGCACAATCTTAAAGGTGATGAGAACGAGCTGCACAAGGCAGGAGTAGCAGAAAAGACTCGTGAATTGAGGCAGCTGAATGAGGAAGAGCTTCAAGGATGCACACTTGAAGAATTGCAGACCCTAGAGGAAAGACTTGAAAGGGACTTGTCCCGTGTTTCAAAAACAAAGGATGAAAGAATCTTAAAACAAATCAATGCACTTAAGAGAAAGGGAATCCAACTGAAGGAAGAAAACCAAAGAACGAAGCAGAGCCTTGTGCATGAACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACATTAATCCTCCTCAAGACTGTGATAGTTCTGATATATTTCTCAGGCTTGGGTTATCTTTATTGAAATAA 582 0.4107 MTRRKIQIKKIDSVTARQVAFSKRRKGLLKKAHELSILCDAEIALLVFSSTGKLFDYANSSIQQVIERHNLKGDENELHKAGVAEKTRELRQLNEEELQGCTLEELQTLEERLERDLSRVSKTKDERILKQINALKRKGIQLKEENQRTKQSLVHEQGQSSESIIICSSSDINPPQDCDSSDIFLRLGLSLLK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0052 193 ProSiteProfiles K-box domain profile. 69 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0052 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0052 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0052 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0052 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0052 193 Coils Coil 76 96 - -
Prci11g0052 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Prci11g0052 193 Coils Coil 132 152 - -
Prci11g0052 193 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Prci11g0052 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0052 193 Pfam K-box region 83 150 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0052 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0052 193 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Prci11g0052 193 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Prci11g0052 193 Coils Coil 103 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0052 Prci-Chr11 861432 867919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0052 1 189 MADS-box Gene Family AT2G22540 44.726 9.91e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0052 K-box 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0052 - - pcin:129285573 319.701