Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci11g0051 | ATGACGAGAAGGAAAATACAGATAAAGAAAATAGACAGTGTAACAGCAAGACAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACATGAACTCTCAACTCTCTGTGATGCTGAGATTGCTTTCTTGGTCTTCTCTTCCACTGGCAAGCTTTATGACTATGCTAGCTCAAGTATTCAGCAGGTAATAGAAAGGTATGATCAACATTCAGCCATTCAAATACAAGGCAAATCATCGGTTGATCTGCAGCTCGAAGGTGATGAGAAGGAGCTGCACAAGGTAGTAGCAGCAGAAAAGACTCGTGAATTGAGGCAGCTGAACGGGGAAGAGCTTCAAGGATGCACGCTTGAAGAATTGCAGACACTAGAGGAAAGACTTGAAAGAGGCTTGTCCCGTGTTTCAAAAACAAAGGATGAAAGAATCTTAAAACAGATCAATGCACTTAAGAGAAAGGGAATCCAACTCGTGGAAGAAAACCGAATAATGAAGCAGAGCCTTGTGCATGAACGAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACATTAATCTTCCTCAAGACTGCTATAGTTCTGATAAGTCTCTCAGGCTTGGGTAA | 615 | 0.4228 | MTRRKIQIKKIDSVTARQVTFSKRRKGLFKKAHELSTLCDAEIAFLVFSSTGKLYDYASSSIQQVIERYDQHSAIQIQGKSSVDLQLEGDEKELHKVVAAEKTRELRQLNGEELQGCTLEELQTLEERLERGLSRVSKTKDERILKQINALKRKGIQLVEENRIMKQSLVHERGQSSESIIICSSSDINLPQDCYSSDKSLRLG | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci11g0051 | 204 | CDD | MADS_MEF2_like | 3 | 74 | IPR033896 | GO:0000977|GO:0045944 | |
Prci11g0051 | 204 | ProSiteProfiles | K-box domain profile. | 85 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Prci11g0051 | 204 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Prci11g0051 | 204 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Prci11g0051 | 204 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Prci11g0051 | 204 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Prci11g0051 | 204 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Prci11g0051 | 204 | Pfam | K-box region | 103 | 168 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Prci11g0051 | 204 | FunFam | Transcription factor, MADS-box | 13 | 82 | - | - | |
Prci11g0051 | 204 | Coils | Coil | 119 | 142 | - | - | |
Prci11g0051 | 204 | SUPERFAMILY | SRF-like | 2 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Prci11g0051 | 204 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 160 | - | - | |
Prci11g0051 | 204 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Prci11g0051 | 204 | Gene3D | - | 14 | 83 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci11g0051 | Prci-Chr11 | 838553 | 844349 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci11g0051 | 1 | 204 | MADS-box Gene Family | AT2G22540 | 45.992 | 2.27e-60 | 187 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Prci11g0051 | K-box | 7.5e-14 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci11g0051 | - | - | pcin:129285573 | 265.774 |