Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0050 ATGACGAGAAGAAAGATACAGATAAAGAAAATAGACAGTGTAACAGCAAGACAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCAAATGAACTCTCAAGTCTCTGTGATGCTGAGATTGCTCTCTTGGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAACTCAAGTATTCAGCAGGTAATTGAAAGGTATGATCAACATTCAGCCATTCAAATACAAGGTAAATCACCTGTTGATGTGCAGCTTAAAGGTGATGAGAACGAGCTGCACAAGGCAGTAGTAGCAGAAAAGACTCGTGAATTGAGGCAGCTGAATGAGGAAGAGCTTCAAGGATGCACACTTGAAGAATTCCAGACACTAGAGGAAAGACTTGAAAGGGACTTGTCCCGTGTTTCAAAAACAAAGGATGAAAGAATCTTAAAACAAATCAATGCACCTAAGAGAAAGGGAATCCAACTGAAGGAAGAAAACCAAAGAACGAAGCAGGTGATCGCAGATTTTCAAACTCTTATCCTCTAA 534 0.4045 MTRRKIQIKKIDSVTARQVAFSKRRKGLFKKANELSSLCDAEIALLVFSSTGKLFDYANSSIQQVIERYDQHSAIQIQGKSPVDVQLKGDENELHKAVVAEKTRELRQLNEEELQGCTLEEFQTLEERLERDLSRVSKTKDERILKQINAPKRKGIQLKEENQRTKQVIADFQTLIL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0050 177 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0050 177 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Prci11g0050 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0050 177 Pfam K-box region 98 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0050 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0050 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0050 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0050 177 Coils Coil 92 112 - -
Prci11g0050 177 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0050 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0050 177 Coils Coil 119 142 - -
Prci11g0050 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0050 177 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 149 - -
Prci11g0050 177 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0050 Prci-Chr11 787664 794451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0050 1 167 MADS-box Gene Family AT2G22540 49.708 1.13e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0050 K-box 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0050 - - pcin:129285573 254.988