Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0048 ATGACGAGAAGGAAAATACAGATAAAGAAAATCGACAGTGTAACGGCAAGACAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAAGAACTCTCAACTCTCTGTGATGCTGAGATTGCTCTCTTGGTCTTCTCTTCCACTGGCAAGCTCTATGATTATGCTAGCTCAAGTATTCAGCAGGTAATAGAAAGGTATGATCAACATTCAGCCATTCAAATACAAGGCAAACCATCTGTTGATCTGCAGCTCGAAGATGATGAGAAGGAACTGCACAAGGTAGCAGTAGCAGAAAAGACTCGTGAATTGAGGCAGCTGAACGGGGAAGAGCTTCAAGGATGCACGCTTGAAGAATTGCAGACACTAGAGGAAAGACTTGAAAGAGGCTTGTCCCGTGTTTCAAAAACAAAGGATGAAAGAATCTTAAAACAGATCAATGCACTTAAGAGAAAGGGAATCCAACTCATGGAAGAAAACCGAAGAATGAAGCAGAGCCTTGTGCATGAACAAGGGCAGTCTTCTGAGTCCATCATCGTTTGCAGTTCATCTGACATTAATCCTCCTCAAGACTGCTATAGTTCTGATAAGTCTCTCAGGCTTGGGTTGTCTTTATTCAAATAA 630 0.4222 MTRRKIQIKKIDSVTARQVAFSKRRKGLFKKAQELSTLCDAEIALLVFSSTGKLYDYASSSIQQVIERYDQHSAIQIQGKPSVDLQLEDDEKELHKVAVAEKTRELRQLNGEELQGCTLEELQTLEERLERGLSRVSKTKDERILKQINALKRKGIQLMEENRRMKQSLVHEQGQSSESIIVCSSSDINPPQDCYSSDKSLRLGLSLFK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0048 209 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci11g0048 209 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Prci11g0048 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0048 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0048 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0048 209 FunFam Transcription factor, MADS-box 13 82 - -
Prci11g0048 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0048 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Prci11g0048 209 Coils Coil 119 142 - -
Prci11g0048 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0048 209 Pfam K-box region 101 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0048 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0048 209 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0048 209 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0048 Prci-Chr11 772669 778914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0048 1 205 MADS-box Gene Family AT2G22540 47.257 1.78e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0048 K-box 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0048 - - pcin:129285573 284.648