LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g0047	ATGACGAGAAGAAAGATAGCGATAGAGAAAATAGAGAACGTAGCAGCGAGGCAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCCATGGAGCTCTCTACTCTCTGTGACGCTGAGATTGCACTCTTCGTGTTTTCTGCTTCTGGCAAACTCTTTGATTACTCTAGTACAAGCATGAGGCAGGTTATTGAAAGGAGAAACTTGTACTCGGATGTGAACCTTGCCAAGTCATGCCAGCCATCCCAGGAGTTGCAGGTTGAAGGTGAATATTTCAAGCTAAACAAGGAACTAAGAGATAAGACTCTTGAAGTGAGACGGCTCAATGGAGAAGAACTACAAGACTTGTCCTTAAAAGACCTAAGAAAACTAGAAGATTTACTCAGCAGAAGCTTGCATCGAATTTCAAAAGCAAAGGTTGAAGTATTTGAGCAGGAGATCAATATTCTTCAGAAAAAGGAAATCAAATCCATGGAAGAAAACGAGAGATTAGATCAGGCCCAATGGTTTGAGCATGAACAAGGCCAGGCATTGGACACTTCTCTCACAATGAGGTTACTCTTTCCCTAA	576	0.4201	MTRRKIAIEKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYSSTSMRQVIERRNLYSDVNLAKSCQPSQELQVEGEYFKLNKELRDKTLEVRRLNGEELQDLSLKDLRKLEDLLSRSLHRISKAKVEVFEQEINILQKKEIKSMEENERLDQAQWFEHEQGQALDTSLTMRLLFP	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g0047	191	ProSiteProfiles	K-box domain profile.	86	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Prci11g0047	191	CDD	MADS_MEF2_like	3	74	IPR033896	GO:0000977\|GO:0045944
	Prci11g0047	191	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Prci11g0047	191	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Prci11g0047	191	Pfam	K-box region	85	168	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Prci11g0047	191	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Prci11g0047	191	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Prci11g0047	191	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Prci11g0047	191	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Prci11g0047	191	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	164	-	-
	Prci11g0047	191	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Prci11g0047	191	SUPERFAMILY	SRF-like	2	81	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g0047	Prci-Chr11	751511	764855	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g0047	1	168	MADS-box Gene Family	AT2G22540	50.588	3.94e-49	157

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Prci11g0047		K-box	1.2e-13	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g0047	-		-	pcin:129285682	248.44