Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0046 ATGACGAGAAGGAAGATAGCGATAAAAAAGATCCAGAACGTATCAGCGAGGCAAGTGGCATTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTACAGAGCTCTCAACTCTCTGTGATGCTGAGATTGCACTCTTTGTGTTTTCTGCTTCTGGCAAGCTCTTTGATTATGCTAGTACAAGCATGGGGCATGTGATTGAAAGGAGAAACTTGTACTTAGATGTAAACCTTGGCAAGACAATCCAGCCATCTCTTGAGCTGCAGGTAGAAGCTGAATATTTTAAGCTAAACAAGGAACTGGGAGAGAAGACTCGTGAATTGAGGCACCTCAATGGAGAAGGACTTCAAGGATTGACCTTAAGAGAACTAAAGAAGCTAGATGATCTAGTTAGCGCATGCTTGCATCGTGTTTCAAAAGCCAAGGCTGAACCATTTGAGCAAGAGATCAGTATTCTGAAGAAACAGGAAGACAGGCTCGTGGAAGAGAACCAGAGACTAAACCAGGAATTAAAATTCATTGAAGAAAATCAGAGATTAGAACAGGTTCCAAGGCTTAAGCATGACCAAGACCAGTGA 576 0.4236 MTRRKIAIKKIQNVSARQVAFSKRRKGLFKKATELSTLCDAEIALFVFSASGKLFDYASTSMGHVIERRNLYLDVNLGKTIQPSLELQVEAEYFKLNKELGEKTRELRHLNGEGLQGLTLRELKKLDDLVSACLHRVSKAKAEPFEQEISILKKQEDRLVEENQRLNQELKFIEENQRLEQVPRLKHDQDQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0046 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0046 191 CDD MADS_MEF2_like 3 68 IPR033896 GO:0000977|GO:0045944
Prci11g0046 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0046 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0046 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0046 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0046 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Prci11g0046 191 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0046 191 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0046 191 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Prci11g0046 191 Coils Coil 149 176 - -
Prci11g0046 191 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Prci11g0046 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0046 Prci-Chr11 717594 728367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0046 1 179 MADS-box Gene Family AT2G22540 49.451 2.52e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0046 K-box 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0046 - - pcin:129285682 265.774